Locus 7048

Sequence ID 3L_DroMel_CAF1
Location 19,101,497 – 19,101,591
Length 94
Max. P 0.977668
window11431

overview

Window 1

Location 19,101,497 – 19,101,591
Length 94
Sequences 3
Columns 107
Reading direction forward
Mean pairwise identity 88.47
Mean single sequence MFE -19.08
Consensus MFE -17.13
Energy contribution -17.13
Covariance contribution 0.00
Combinations/Pair 1.00
Mean z-score -2.94
Structure conservation index 0.90
SVM decision value 1.80
SVM RNA-class probability 0.977668
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19101497 94 + 23771897
GCUUGGUUAAGAAGCAAUACCAAUUUGCUAUUGCAGAAUCAAUUGUUUCUUGUUCCCCAU-------------AUCAUACGAUUCUUCAAAUUUUGAAUAACUUUAU
...(((.(((((((((((.....(((((....)))))....)))))))))))....))).-------------........((((..........))))........ ( -16.90)
>DroSec_CAF1 19272 107 + 1
ACUUGGUUAAGAAGCAAUACCAAUUUGCUAUUGCAGAAUCAAUUGUUUCUUGUUCCACAUUUCUAUAAAUUUAAUCAAAUCAUUCUUCAAAUUUUGAAUAACUUUAU
...(((.(((((((((((.....(((((....)))))....)))))))))))..))).......(((((.(((.(((((.............))))).))).))))) ( -20.92)
>DroSim_CAF1 19177 107 + 1
ACUUGGUUAAGAAGCAAUACCAAUUUGCUAUUGCAGAAUCAAUUGUUUCUUGUUCCACAUUUCUAUAAAUUCAAUCAUACCAUUCUUCAAAUUUUGAAUAACUUUAU
...(((.(((((((((((.....(((((....)))))....)))))))))))..)))...........((((((...................))))))........ ( -19.41)
>consensus
ACUUGGUUAAGAAGCAAUACCAAUUUGCUAUUGCAGAAUCAAUUGUUUCUUGUUCCACAUUUCUAUAAAUU_AAUCAUACCAUUCUUCAAAUUUUGAAUAACUUUAU
....((.(((((((((((.....(((((....)))))....)))))))))))..)).........................((((..........))))........ (-17.13 = -17.13 +   0.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:24 2006