Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,093,424 – 19,093,525 |
Length | 101 |
Max. P | 0.626141 |
Location | 19,093,424 – 19,093,525 |
---|---|
Length | 101 |
Sequences | 6 |
Columns | 112 |
Reading direction | forward |
Mean pairwise identity | 85.38 |
Mean single sequence MFE | -29.50 |
Consensus MFE | -21.51 |
Energy contribution | -21.68 |
Covariance contribution | 0.17 |
Combinations/Pair | 1.17 |
Mean z-score | -2.58 |
Structure conservation index | 0.73 |
SVM decision value | 0.19 |
SVM RNA-class probability | 0.626141 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19093424 101 + 23771897 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCACA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CGAACACACAAAGCGA-AAAAAAAA------AAAA (((.(((((........)))))))).(((((((((((((((-(((....)..)))))))..)--)))))((....)-)............)))-).......------.... ( -30.50) >DroSec_CAF1 11009 108 + 1 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACACACAAAGCGGCAACAAAAAAAAACAAAAA .((.(((((........)))))))((((.((((((((((((-(((....)..)))))))..)--)))))((....)-).......).))))(....)............... ( -30.50) >DroSim_CAF1 10818 102 + 1 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACAAACAAAGCGGCAAAAAAAA------AAAA ...........(((((.((.((((((((((.((((((((((-(((....)..)))))))..)--))))))))))..-........)))))))))))......------.... ( -29.90) >DroEre_CAF1 11792 97 + 1 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCUCGGGGCAC-CAAACACACAAAGCAGAAAAAAAA----------- .((.(((((........)))))))(((((((.(((((((((-(((....)..)))))))..)--))))))))))..-........................----------- ( -28.30) >DroYak_CAF1 11007 96 + 1 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA-AUCGCGAGUAAUUGUGGAAU--GCCACGGGGCAC-CAAACACACAAAGCAGAAAA-AAA----------- .((.(((((........)))))))((((.((((((((((((-(((....)..)))))))..)--)))))((....)-).......).))))......-...----------- ( -29.20) >DroAna_CAF1 11749 101 + 1 CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGUUGCCGCCACAAAUUGCGAGUAAUUGCGGAAUGUGCCGCAAGGCACACAUACAGAGAAAGAAA-----AAAA------CAAA ..(((.((((((((((.(((..((((.........)))).....))))).))))))))...((((((....))))))))).............-----....------.... ( -28.60) >consensus CCAUGAUGCAAUUGUCAGCAUUUGGCUUCGGUGGCACCGCA_AUCGCGAGUAAUUGUGGAAU__GCCACGGGGCAC_CAAACACACAAAGCAG_AAAAAAAA______AAAA .((.(((((........)))))))((((((.((((.(((((...(....)....))))).....))))))))))...................................... (-21.51 = -21.68 + 0.17)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:23 2006