Locus 7044

Sequence ID 3L_DroMel_CAF1
Location 19,081,878 – 19,081,970
Length 92
Max. P 0.699507
window11424

overview

Window 4

Location 19,081,878 – 19,081,970
Length 92
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 79.86
Mean single sequence MFE -22.77
Consensus MFE -12.68
Energy contribution -12.34
Covariance contribution -0.33
Combinations/Pair 1.17
Mean z-score -2.02
Structure conservation index 0.56
SVM decision value 0.35
SVM RNA-class probability 0.699507
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19081878 92 + 23771897
AGAGCUUCCCACCAAAUGGAAGCCAAUGGAUGAAAAAUCGUUUCACUCAAUUGAGCACCAACUCAUCCGGCAGCUA-----------GACUGAGUUUCAUUUC
.(.((((((........)))))))((((((.((((.....))))(((((.((.(((.((.........))..))).-----------)).))))))))))).. ( -20.20)
>DroPse_CAF1 9924 100 + 1
AGC---ACCCACCAAAUGGAAGCCAAUGGAUGAAGAAUUUUUCCACUCAAUUGGGCACCAAUUCAACUGGCAGCUCUCGGCCCUCUCCAAUGGGUUUCAUUUC
...---.......((((((((.(((.((((.((.(((((..((((......))))....)))))....(((........))).)))))).))).)))))))). ( -25.40)
>DroEre_CAF1 7426 92 + 1
ACAGCUCCCCACAAAAUGGAAGCCAAUGGAUGAAAAAUCGUUCCACCCAAUUGAGCACCAACUCAAAUGGCAGCUC-----------AUCUGAGUUUCAUUUC
.............(((((((.((((.(((((((....))).)))).....(((((......))))).)))).((((-----------....))))))))))). ( -21.40)
>DroYak_CAF1 6659 92 + 1
ACAGUUUCUCAGAAAAGGGAAGCCAAUGGAUGAAAAAUCGUUCCACUCAAUUGAGCACCAACUCAUCUGGCAGCUC-----------AUCUGAGUUUCAUUUC
...(((((((......)))))))....((((((....)))))).(((((..(((((.(((.......)))..))))-----------)..)))))........ ( -25.70)
>DroAna_CAF1 7676 89 + 1
AAA---CCCCACAAAAUGGAAGCCAAUGGAUGAAAAAUAUUUCCAGUCAAUUGAGCAGCAAUUCAACUGGCAGCUC-----------GACUGAGUUUCAUUUC
...---............(((((...((((...........)))).(((.((((((.((..........)).))))-----------)).))))))))..... ( -18.50)
>DroPer_CAF1 5356 100 + 1
AGC---ACCCACCAAAUGGAAGCCAAUGGAUGAAGAAUUUUUCCACUCAAUUGGGCACCAAUUCAACUGGCAGCUCUCGGCCCUCUCCAAUGGGUUUCAUUUC
...---.......((((((((.(((.((((.((.(((((..((((......))))....)))))....(((........))).)))))).))).)))))))). ( -25.40)
>consensus
AGA___ACCCACAAAAUGGAAGCCAAUGGAUGAAAAAUCGUUCCACUCAAUUGAGCACCAACUCAACUGGCAGCUC___________AACUGAGUUUCAUUUC
.............(((((((.((((.((((...........))))......((((......))))..)))).((((...............))))))))))). (-12.68 = -12.34 +  -0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:18 2006