| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 19,077,884 – 19,077,978 |
| Length | 94 |
| Max. P | 0.681355 |
| Location | 19,077,884 – 19,077,978 |
|---|---|
| Length | 94 |
| Sequences | 6 |
| Columns | 100 |
| Reading direction | forward |
| Mean pairwise identity | 82.97 |
| Mean single sequence MFE | -30.58 |
| Consensus MFE | -21.82 |
| Energy contribution | -22.52 |
| Covariance contribution | 0.70 |
| Combinations/Pair | 1.15 |
| Mean z-score | -1.96 |
| Structure conservation index | 0.71 |
| SVM decision value | 0.31 |
| SVM RNA-class probability | 0.681355 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19077884 94 + 23771897 ---CAGCCCGAUGUCGUGGAUCCCAAUU-CGUUUUCU-CCAAAGGAGACGGAUUGGAUUCGGCACGGCA-CGCCGGAAACAGGUUUCAAUUGCUUUGCCU ---...((((....)).))...((((((-((((((((-....))))))))))))))....((((.((((-.((((....).)))......)))).)))). ( -34.90) >DroSec_CAF1 2891 94 + 1 ---CAGCCCGAUGUCCUGGCUCCCAAUU-CGUUUUCU-CCAAAGGAAACGGAUUGGAUUCGGCACGGCC-CGCCGGAAACAGGUUUCAAUUGCUUUACCU ---.(((..((...((((....((((((-((((((((-....)))))))))))))).((((((......-.))))))..))))..))....)))...... ( -33.50) >DroSim_CAF1 2651 94 + 1 ---CAGCCCGAUGUCCUGGCUCCCAAUU-CGUUUUCU-CCAAAGGAGACGGAUUGGAUUCGGCACGGCC-CGCCGGAAACAGGUUUCAAUUGCUUUACCU ---.(((..((...((((....((((((-((((((((-....)))))))))))))).((((((......-.))))))..))))..))....)))...... ( -33.60) >DroEre_CAF1 3301 89 + 1 ---GC-CCAGAUGUCCUGGCUCCCAAUU-CGUU-UCU-UCAAAGGAGACGGAUUGGAUG---CACGGCG-CGCCGGAAACAGGUUUCGAUUGCUUUACCU ---((-...((...((((((..((((((-((((-(((-.....)))))))))))))..)---).(((..-..)))....))))..))....))....... ( -33.80) >DroYak_CAF1 2690 89 + 1 ---CA-CCAGAUGUCCUGGCUCCCAAUU-CGUU-UCU-GCAAAGGAGACGGAUCGGAUU---CACGGCG-UGCCGGAAACAGGUUUCAAUUGCUUUACCU ---..-...((...((((....((.(((-((((-(((-.....)))))))))).)).((---(.(((..-..)))))).))))..))............. ( -27.00) >DroAna_CAF1 3560 95 + 1 GCAUA-CCAGAUGUCCUGGCUUUCAAUUUCAUUUUCAGCGAAAGGACAUGGAUCGAAUU---UACGGCAAAGCCGGAAACAUAUUUCAAUUGCUGCCGC- .....-(((..((((((.(((...............)))...)))))))))........---..(((((..((..((((....))))....))))))).- ( -20.66) >consensus ___CA_CCAGAUGUCCUGGCUCCCAAUU_CGUUUUCU_CCAAAGGAGACGGAUUGGAUU___CACGGCA_CGCCGGAAACAGGUUUCAAUUGCUUUACCU .........((...((((..((((((((.((((((((.....))))))))))))))........((((...))))))..))))..))............. (-21.82 = -22.52 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:15 2006