Locus 7041

Sequence ID 3L_DroMel_CAF1
Location 19,069,796 – 19,069,902
Length 106
Max. P 0.814697
window11420

overview

Window 0

Location 19,069,796 – 19,069,902
Length 106
Sequences 5
Columns 106
Reading direction forward
Mean pairwise identity 91.15
Mean single sequence MFE -25.76
Consensus MFE -20.44
Energy contribution -20.68
Covariance contribution 0.24
Combinations/Pair 1.04
Mean z-score -1.73
Structure conservation index 0.79
SVM decision value 0.66
SVM RNA-class probability 0.814697
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19069796 106 + 23771897
AUAACUUUGCGAAUUGCCCGAAUUCCAACUGUGAUUGCCUGGCUAAAUGGGAAAGUGGAGAUUGAGAACAAUUUUCAACUGGGCAAACUGGGCAAAGUUCCCAAAA
..((((((((...((((((...(((((...((.(.....).))....))))).(((((((((((....)))))))).))))))))).....))))))))....... ( -29.50)
>DroSec_CAF1 23781 95 + 1
AGAACUUAGCGAAUUGCCCGAAUUCCAACUGUGAUUGCCUGGCUAAAUGGGAAACUGGAGAUUG--GACCAUUUUCAACUGG---------GCAAAGUUCCCAAAA
.((((((.((.......((((.(((((...((.....((((......))))..))))))).)))--).(((........)))---------)).))))))...... ( -21.80)
>DroSim_CAF1 24015 95 + 1
AGAACUUUGCGAAUUGCCCGAAUUCCAACUGUGAUUGCCUGGCUAAAUGGGAAACUGGAGAUUG--AACCAUUUUCAACUGG---------GCAAAGUUCCCAAAA
.(((((((((........(((.(((((...((.....((((......))))..))))))).)))--..(((........)))---------)))))))))...... ( -22.60)
>DroEre_CAF1 25863 95 + 1
AGAACUUUGCGAAUUGCCCGAAUUCCAACUGUGAUUGCUUGGAUAAAUGGGAAACUGGAGAUUG--AACAAUUUUCAACUGG---------GCAAAGUUCCCAAAU
.(((((((((......((((...((((((.......).)))))....))))....((((((((.--...)))))))).....---------)))))))))...... ( -26.90)
>DroYak_CAF1 39156 95 + 1
AGAACUUUGCGAAUUGCCCGAAUUCCAACUGUGAUUGCUUGGAUAAAUGGGAAACUGGAGAUUG--AACCAUUUCCAACUGG---------GCAAAGUUCCCAAAU
.(((((((((......((((...((((((.......).)))))....))))....(((((((..--....))))))).....---------)))))))))...... ( -28.00)
>consensus
AGAACUUUGCGAAUUGCCCGAAUUCCAACUGUGAUUGCCUGGCUAAAUGGGAAACUGGAGAUUG__AACCAUUUUCAACUGG_________GCAAAGUUCCCAAAA
.(((((((((......((((....(((...((....)).))).....))))....(((((((........)))))))..............)))))))))...... (-20.44 = -20.68 +   0.24)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:14 2006