Locus 7040

Sequence ID 3L_DroMel_CAF1
Location 19,066,547 – 19,066,648
Length 101
Max. P 0.565024
window11419

overview

Window 9

Location 19,066,547 – 19,066,648
Length 101
Sequences 6
Columns 110
Reading direction forward
Mean pairwise identity 81.13
Mean single sequence MFE -33.53
Consensus MFE -22.71
Energy contribution -23.27
Covariance contribution 0.56
Combinations/Pair 1.17
Mean z-score -1.39
Structure conservation index 0.68
SVM decision value 0.06
SVM RNA-class probability 0.565024
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19066547 101 + 23771897
UGUGUUGGAUCCUUGAGGCCGUAAAAUAGCCCACAAGGAG---------CAGAGGAGCAAAGGAGCCUGGCAGCAGGCUGGGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
(((((((..((((((.(((.........)))..))))))(---------(((..((......(((((..((.....))..)))))..))..))))))).))))....... ( -35.10)
>DroSec_CAF1 20593 96 + 1
UGUGUUGGAUCCUUGGGGCCGUAAAAUAGCCCGCAAGGAG---------CAGAGGAGCAAAGGAG-----CAGCAGGCUGGGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
....((((.((((((((((.........)))).))))))(---------(......((......)-----)....(((((((((.....))))..)))))))...)))). ( -31.60)
>DroSim_CAF1 20805 93 + 1
UGUGUUGGAUCCUUGGGGCCGUAAAAUAGCCCGCAAGGAG---------CAGAGGAGCAAAGGAG--------CAGGCUGGGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
....((((.((((((((((.........)))).))))))(---------(......((......)--------).(((((((((.....))))..)))))))...)))). ( -31.60)
>DroEre_CAF1 22714 105 + 1
UGUGUUGGAUCCUUGGGGCCGUAAAAUAGCCCGCCAGGAGCCA-----GCAAAGGAGCAAAGGAGCUUGGGAGCAGGCUGAGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
..((((((.((((.(((((.........)))).).)))).)))-----)))...((((......)))).((.((.(((((((((.....)))..))))))))...))... ( -36.90)
>DroYak_CAF1 35806 110 + 1
UGUGUCGGAUCCUUGGGGCCGUAAAAUAGUCCGCAAGGAGCCAAAGGAGCAAGGGAGCAAAGGAGCUUGGGAGCAGGCUGGGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
((((.(((.((((((((((.........)))).)))))).))...(((((((..((((.....((((((....))))))..))))..)).))).)).).))))....... ( -38.70)
>DroAna_CAF1 8385 76 + 1
UGUGCAAGUUCCUUGGGGCCGUAAAAUAGCCCGUAAGGAG---------------------------------CAGGCUGAGCUCAAUUAGCUGUCAGACGCAGGACGA-
(.(((..((((((((((((.........)))).)))))))---------------------------------).((((((......)))))).......))).)....- ( -27.30)
>consensus
UGUGUUGGAUCCUUGGGGCCGUAAAAUAGCCCGCAAGGAG_________CAGAGGAGCAAAGGAG______AGCAGGCUGGGCUCAAUUAGCUGUCAGUCGCAGGCCGAA
....((((.((((((((((.........)))).))))))....................................(((((((((.....))))..))))).....)))). (-22.71 = -23.27 +   0.56)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:13 2006