Locus 7038

Sequence ID 3L_DroMel_CAF1
Location 19,062,518 – 19,062,637
Length 119
Max. P 0.500000
window11416

overview

Window 6

Location 19,062,518 – 19,062,637
Length 119
Sequences 5
Columns 119
Reading direction forward
Mean pairwise identity 81.01
Mean single sequence MFE -32.54
Consensus MFE -20.52
Energy contribution -20.96
Covariance contribution 0.44
Combinations/Pair 1.05
Mean z-score -1.64
Structure conservation index 0.63
SVM decision value -0.07
SVM RNA-class probability 0.500000
Prediction OTHER

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19062518 119 + 23771897
UAAAUGUAGCAUAUACGUAUGUAGGUGGGGGGGGGGGGCUACUCACAACGACGUGAAGUCGCUCUAACCAGGGCGCUAUUCUCUCCACUGCAUCCACACAGUCUAGCACUGGAUGCACG
........(((((....))))).(((((((((((..(((...((((......))))....(((((....)))))))).)))))))))))(((((((.............)))))))... ( -40.92)
>DroSec_CAF1 16693 105 + 1
UAAAUGUUGCAUAUAUGU--------------GGGGGACUACUCACAACGACGUGGAGUCGCUCCAACCAGGGCGUUAUUCUCUCCACUGCAUCCACACAGUCAAGUACUGGAUGCACG
.....((((.......((--------------((....))))......))))((((((.(((((......))))).......))))))((((((((.((......))..)))))))).. ( -35.02)
>DroSim_CAF1 16847 105 + 1
UAAAUGUAGCAUAUAUGU--------------GGGGGGCUACUCACAACGACGUGGAGUCGCUCCAACCAGGGCGUUAUUUUCUCCACUGCAUCCACACAGUCCAGCACUGGAUGCACG
...............(((--------------(((......)))))).....((((((.(((((......))))).......))))))((((((((.............)))))))).. ( -32.32)
>DroEre_CAF1 18251 105 + 1
CACAUAAUACAUAUACAU--------------AUGGUGGUACUCACAAUGACAUGGAGGCGCUCCAACCAGGGCGUUAUUCUCUCCACUGCGUCCACACAAUCCAGUACUGGAUGCACG
.........((((....)--------------)))((((..(((.((......)))))((((((......))))))........))))((((((((.((......))..)))))))).. ( -27.00)
>DroYak_CAF1 31763 101 + 1
AACACAUAGCAUAU------------------AUGUGGUUACUCACAAUGACGUGAAGGCGCUCCAACCAGGGCGUAAUUCUCUCCACUGCAUCCACACAAUCCAGAACUGGAUGCACG
..((((((.....)------------------))))).....((((......))))..((((((......))))))............((((((((.............)))))))).. ( -27.42)
>consensus
UAAAUGUAGCAUAUACGU______________GGGGGGCUACUCACAACGACGUGGAGUCGCUCCAACCAGGGCGUUAUUCUCUCCACUGCAUCCACACAGUCCAGCACUGGAUGCACG
....................................................((((((.(((((......))))).......))))))((((((((.............)))))))).. (-20.52 = -20.96 +   0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:10 2006