Locus 7037

Sequence ID 3L_DroMel_CAF1
Location 19,061,968 – 19,062,083
Length 115
Max. P 0.912916
window11415

overview

Window 5

Location 19,061,968 – 19,062,083
Length 115
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 69.15
Mean single sequence MFE -34.89
Consensus MFE -14.87
Energy contribution -16.79
Covariance contribution 1.92
Combinations/Pair 1.12
Mean z-score -1.98
Structure conservation index 0.43
SVM decision value 1.09
SVM RNA-class probability 0.912916
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19061968 115 + 23771897
AUGUCACUGGCCAGUAGGCUGCGGCCAAACUUUUGAAAUGCAGCCGCGUUUAACUUUUUCACAAAGUA-----ACUAGAGGCACAUGCAGCUACCAGGGCGGGAUUGGGUUCACCCGACU
..(((.((.(((.((((.((((.(((.........((((((....)))))).(((((.....))))).-----......)))....))))))))...))).))...(((....)))))). ( -37.80)
>DroSec_CAF1 16143 115 + 1
AUGUCACUGGCCAGCAGGCUGCGGCCAAACUUCUGAAAUGCAGCCGCGUUUAACUUCUUCACAAAGUA-----ACUAGAGGCACAUGCAGCUACCAGGGCGGGAUUGGGUUCACCCGACU
.((((.((((..(((.(((((((..((......))...)))))))((((....(((((..........-----...)))))...)))).))).))))))))((.(((((....))))))) ( -38.22)
>DroSim_CAF1 16292 120 + 1
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNCCCCCCCCAAAACAAGGGGGCGCGUUGCACAAAAAAAAAACAGGGCGGGAUUGGGUUCACCCGACU
......................................................((((((((.......))))).((.(((.............))).))))).(((((....))))).. ( -23.02)
>DroEre_CAF1 17701 115 + 1
AUGUCACUGGCCAGCAGGCUGCGUCCAAACUUUUGAAAAGCAGCCGCGUUUAACUUCUUCACAAAGUA-----ACUAGAGGCACAUGCAGCUACUAGGGCGGGAUUAGGUUCAUCCGCCU
......((((..(((.((((((...(((....)))....))))))((((....(((((..........-----...)))))...)))).))).))))(((((((......))..))))). ( -34.52)
>DroYak_CAF1 31212 115 + 1
AUGUCACUGGCCAGCAGGCUGCGUCCAAACUUUUGGAAAGCAGCCGCGUUUAACUUCUUGACAAAGUA-----ACUAGAGGCACAUGCAGCUACUAGGGCGGGAUUGGGUUCGUCCGACU
..(((..((((..(((((((((.(((((....)))))..))))))((.((((....(((....)))..-----..)))).))...))).))))...(((((((......)))))))))). ( -40.90)
>consensus
AUGUCACUGGCCAGCAGGCUGCGGCCAAACUUUUGAAAAGCAGCCGCGUUUAACUUCUUCACAAAGUA_____ACUAGAGGCACAUGCAGCUACCAGGGCGGGAUUGGGUUCACCCGACU
......((.(((.((.((((((.................))))))))...........................((.(.(((.......))).).))))).)).(((((....))))).. (-14.87 = -16.79 +   1.92)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:09 2006