Locus 7035

Sequence ID 3L_DroMel_CAF1
Location 19,042,014 – 19,042,108
Length 94
Max. P 0.999258
window11413

overview

Window 3

Location 19,042,014 – 19,042,108
Length 94
Sequences 5
Columns 94
Reading direction forward
Mean pairwise identity 95.26
Mean single sequence MFE -38.92
Consensus MFE -34.94
Energy contribution -35.22
Covariance contribution 0.28
Combinations/Pair 1.07
Mean z-score -2.40
Structure conservation index 0.90
SVM decision value 3.47
SVM RNA-class probability 0.999258
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19042014 94 + 23771897
CUAGGGGACACCUAUCUAAUGACCCUCUAAUGGGCGCAGGAUUGGGGGAAGGGGUUCUUGUGGGUGCCGGGGGAUUACCUUUGGCAUCCGUGCU
...((((((.(((.((....)).((((((((.........)))))))).))).))))))..((((((((((((....))))))))))))..... ( -35.80)
>DroSec_CAF1 175234 92 + 1
CUAGGGGACACCCAUCUAAUGACCCACUAAUGGGUGCGGGAU--GGGGAAGGGGUUCUUGUGGGUGCCGGGGGAUUACCUUUGGCAUCCGUGCU
...((((((.(((((((....(((((....)))))...))))--)))......))))))..((((((((((((....))))))))))))..... ( -42.30)
>DroSim_CAF1 184879 92 + 1
CUAGGGGACACCCAUCUAAUGACCCACUAAUGGGUGCGGGAU--GGGGAAGGGGUUCUUGUGGGUGCCGGGGGAUUACCUUUGGCAUCCGUGCU
...((((((.(((((((....(((((....)))))...))))--)))......))))))..((((((((((((....))))))))))))..... ( -42.30)
>DroEre_CAF1 177377 92 + 1
CUAGGGGACACCCAUCUAAUGACCCUCUAAUGGGUGCGGGAU--GAGGAAGGGGUUAUUGUGGGUGCCGGGGGAUUACCUUUGGCAUCCGUGCU
....((.((.(((((((....((((......))))...))))--).)).............((((((((((((....)))))))))))))).)) ( -37.10)
>DroYak_CAF1 198749 92 + 1
CUAGGGGACACCCAUCUAAUGACCCUCUAAUGGGUGCGGGAU--GAGGAAGGGGUUCUUGGGGGGGCCGGGGGAUUACCUUUGGCAUCCGUGCU
...(((....)))........((((......))))(((((((--(..((((((((((((.((....)).))))))).)))))..))))).))). ( -37.10)
>consensus
CUAGGGGACACCCAUCUAAUGACCCUCUAAUGGGUGCGGGAU__GGGGAAGGGGUUCUUGUGGGUGCCGGGGGAUUACCUUUGGCAUCCGUGCU
...((((((.(((.(((..((((((......)))).))........))).)))))))))..((((((((((((....))))))))))))..... (-34.94 = -35.22 +   0.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:07 2006