Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 19,040,173 – 19,040,267 |
Length | 94 |
Max. P | 0.684338 |
Location | 19,040,173 – 19,040,267 |
---|---|
Length | 94 |
Sequences | 6 |
Columns | 120 |
Reading direction | forward |
Mean pairwise identity | 69.09 |
Mean single sequence MFE | -16.75 |
Consensus MFE | -9.16 |
Energy contribution | -10.55 |
Covariance contribution | 1.39 |
Combinations/Pair | 1.18 |
Mean z-score | -1.42 |
Structure conservation index | 0.55 |
SVM decision value | 0.31 |
SVM RNA-class probability | 0.684338 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 19040173 94 + 23771897 ------------AAACUUCAUA------------UCCACUACAUGCCUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGGCUAUAA--AAAAUC ------------..........------------.............(((.(((.(((.((.((((........)))).)))))..))).)))...(((.....))).....--...... ( -19.10) >DroSec_CAF1 173437 94 + 1 ------------AAAAUUUCAA------------UCCACCAUAUGCAUGCUUCACUGUAUCUGGCCAUUCAACCGACCCGAACACUUGACGUAACUGCCAAAACGGCUAUAA--AAAAUC ------------..........------------....(((.(((((........))))).)))................................(((.....))).....--...... ( -9.80) >DroSim_CAF1 183114 94 + 1 ------------AAAAUUGCAA------------UCCACUAUAUGCUUGCUUCACUGUAUCUGGCCAUUCAACCGGCCCGAACACUUGACGUAACUGCCAAAACAGCUAUAA--AAAAUC ------------......(((.------------.........)))((((.(((.(((.((.((((........)))).)))))..))).))))(((......)))......--...... ( -14.80) >DroEre_CAF1 175556 106 + 1 UUGAUUAAACUGAAACUUCCAC------------UUCACUAUACGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGAAGUAACUGCCAA-ACGGCUUUAAA-AAAAUC ..........((((........------------))))........(((((((..(((.((.((((........)))).)))))...)))))))..(((..-..)))......-...... ( -22.80) >DroYak_CAF1 196960 119 + 1 AGCAUUUACUAUAAGCAUUUACUAUAUUUACAUAUACACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUAGACGUAACUGCCAA-ACGGCAUUAAAAAAAAUC .....((((..(((((((....(((((....)))))......)))))))......(((.((.((((........)))).)))))......)))).((((..-..))))............ ( -24.20) >DroAna_CAF1 170350 75 + 1 ------------AGAAUU--AUU-----------CUAAUUACAAGCUUGUUUCACUGAAACUGGGCAUUAAA------------CUUGACGCAACUACCAAACGGGCUUUAA-------- ------------......--...-----------........((((((((((..((......))((.(((..------------..))).)).......))))))))))...-------- ( -9.80) >consensus ____________AAAAUUCCAA____________UCCACUAUAUGCUUGCUUCACUGUACCUGGCCAUUCAACCGGCCCGGACACUUGACGUAACUGCCAAAACGGCUAUAA__AAAAUC ...............................................(((.((..(((.((.((((........)))).)))))...)).)))...(((.....)))............. ( -9.16 = -10.55 + 1.39)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:06 2006