Locus 7033

Sequence ID 3L_DroMel_CAF1
Location 19,039,016 – 19,039,119
Length 103
Max. P 0.613873
window11411

overview

Window 1

Location 19,039,016 – 19,039,119
Length 103
Sequences 6
Columns 112
Reading direction reverse
Mean pairwise identity 86.48
Mean single sequence MFE -39.10
Consensus MFE -28.64
Energy contribution -28.44
Covariance contribution -0.19
Combinations/Pair 1.15
Mean z-score -2.84
Structure conservation index 0.73
SVM decision value 0.16
SVM RNA-class probability 0.613873
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19039016 103 - 23771897
AAUUGGGGCCACGCUGGGUGGGGGAAAAGCAC--ACGCACC----CGCCCACAUCGAUGGCAGAUACUAAAUGCUCUAUAUGCAUAUG---GCUAAUGGAUAUGGGGCCCCA
...((((((((((.((((((((......((..--..)).))----))))))...)).))))...........(((((((((.(((...---....))).))))))))))))) ( -41.40)
>DroSec_CAF1 172338 103 - 1
AAUUGGGGCCACGCUGGGUGGGGGAAAAGCAC--ACGCACC----CGCCCACAUCGAUGGCAGAUACUAAAUGCUCUAUAUGCAUAUG---GCUAAUGGAUAUGGGGCCCCA
...((((((((((.((((((((......((..--..)).))----))))))...)).))))...........(((((((((.(((...---....))).))))))))))))) ( -41.40)
>DroSim_CAF1 181979 103 - 1
AAUUGGGGCCACGCUGGGUGGGGGAAAAGCAC--ACGCACC----CGCCCACAUCGAUGGCAGAUACUAAAUGCUCUAUAUGCAUAUG---GCUAAUGGAUAUGGGGCCCCA
...((((((((((.((((((((......((..--..)).))----))))))...)).))))...........(((((((((.(((...---....))).))))))))))))) ( -41.40)
>DroEre_CAF1 174385 103 - 1
AAUUGGGGCCACGUUGGGCGGGGGAAAAGCAC--ACGCACC----CGCCCACAUCGAUGGGAGAUACUAAAUGCUCUAUAUGCAUAUG---GCUAAUGGAUAUGGGGCCCCA
...(((((((.((.((((((((......((..--..)).))----))))))...)).(((......)))......((((((.(((...---....))).))))))))))))) ( -40.70)
>DroYak_CAF1 195733 103 - 1
AAUUGGGGCCACGUUGGGUGGGGGAAAAGCAC--ACGCACC----CGCCCACAUCGAUGGGAGAUACUAAAUGCUCUAUAUGCAUAUG---GCUAAUGGAUAUGGGGCUCCA
...(((((((.(((((((((((((....((..--..))..)----).))))).))))))................((((((.(((...---....))).))))))))))))) ( -36.40)
>DroAna_CAF1 169415 95 - 1
AAUUGGGGCCACAUUGGGUUGGGGAGUGGGAGGGAGGUAGCUUGGAGCCCACAUGGA----------------CUCUAUAUGCAUAUGGUGGCUAAUGGAUAUGG-GCCCCA
...(((((((.....(((((.(...(((((...(((....)))....))))).).))----------------)))(((((.(((.(((...)))))).))))))-)))))) ( -33.30)
>consensus
AAUUGGGGCCACGCUGGGUGGGGGAAAAGCAC__ACGCACC____CGCCCACAUCGAUGGCAGAUACUAAAUGCUCUAUAUGCAUAUG___GCUAAUGGAUAUGGGGCCCCA
...(((((((.((.((((((........((......)).......))))))...))...................((((((.(((..........))).))))))))))))) (-28.64 = -28.44 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:36:05 2006