Locus 7028

Sequence ID 3L_DroMel_CAF1
Location 19,023,380 – 19,023,477
Length 97
Max. P 0.890720
window11397

overview

Window 7

Location 19,023,380 – 19,023,477
Length 97
Sequences 6
Columns 103
Reading direction forward
Mean pairwise identity 78.32
Mean single sequence MFE -21.45
Consensus MFE -16.76
Energy contribution -17.23
Covariance contribution 0.47
Combinations/Pair 1.18
Mean z-score -1.53
Structure conservation index 0.78
SVM decision value 0.96
SVM RNA-class probability 0.890720
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19023380 97 + 23771897
AAACUCAAUUCUAGUCAA----AUGAUACCU-UAUUUUCUGACAGUGCACAACCCC-CUUUUCAUGUGUUCGUGCUGCGGCCGACUCCACUGGCCGCCUGUCA
.............(((..----..)))....-........(((((.(((((((...-..........))).)))).(((((((.......)))))))))))). ( -24.22)
>DroSec_CAF1 157197 97 + 1
AAACUCAACUCUAGCCAA----AUGAUACCU-UAUUUUCUGACAGUGCACAAACCC-CUUUCCAUGUGUUCGUGCUGCGGCCGACUCCACUGGCCGCCUGUCA
..................----.........-........(((((.((((.(((.(-........).))).)))).(((((((.......)))))))))))). ( -25.00)
>DroSim_CAF1 165799 97 + 1
AAACUCAACUCUAGCCAA----AUGAUACCU-UAUUUUCUGACAGUGUAUAACCCC-CUUUUCAUGUGUUCGUGAUGCGGCCGACUCCACUGGCCGCCUGUCA
..................----.........-........(((((...........-....(((((....))))).(((((((.......)))))))))))). ( -22.90)
>DroEre_CAF1 158121 98 + 1
AAAUUCAACUCUAGCCAA----AUGUAACCA-UAUUUUCUGACAGUGUACAACCCCCCUCCUCAUGUGUUCAUGCUGCGGCUGUCUGCACUGGCCGCCUGUCA
..................----.........-........(((((.................((((....))))..((((((.........))))))))))). ( -18.20)
>DroYak_CAF1 179823 97 + 1
AAACUUAGCUCUAGCCAA----AAGUUACGA-UAUUUUCUGACAGUGUACAACCCC-CUUCUCAUGUGUUCAUGCUGCGGCCGACUGCUCUGGCCGCCUGUCA
.(((((.((....))...----)))))....-........(((((...........-.....((((....))))..(((((((.......)))))))))))). ( -23.80)
>DroAna_CAF1 154801 89 + 1
--ACUAAGUUUUAUACAAUAAUAAAUUCCUAUUUUUUUUUUCCAGUGUAAGACUAA-C-----------UCCUGUUGCGGUUGACUGCACUGGCCGCCUGUCA
--....((((((((((............................))))))))))..-.-----------.......((((((.........))))))...... ( -14.59)
>consensus
AAACUCAACUCUAGCCAA____AUGAUACCA_UAUUUUCUGACAGUGUACAACCCC_CUUUUCAUGUGUUCGUGCUGCGGCCGACUCCACUGGCCGCCUGUCA
.......................................((((((.................((((....))))..(((((((.......))))))))))))) (-16.76 = -17.23 +   0.47)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:52 2006