Locus 7027

Sequence ID 3L_DroMel_CAF1
Location 19,016,982 – 19,017,102
Length 120
Max. P 0.741807
window11396

overview

Window 6

Location 19,016,982 – 19,017,102
Length 120
Sequences 3
Columns 120
Reading direction reverse
Mean pairwise identity 82.78
Mean single sequence MFE -33.87
Consensus MFE -21.86
Energy contribution -22.87
Covariance contribution 1.00
Combinations/Pair 1.08
Mean z-score -2.21
Structure conservation index 0.65
SVM decision value 0.45
SVM RNA-class probability 0.741807
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19016982 120 - 23771897
GAAAGUAAUAACGAUUUGGAAAGGAGCUUGAUCAUAAACUUUGGAUACUCCGAAGCAAGGCAGGAAGUACUGGAUUGGGGAUUGAGAUAUAAGAAAGCCUCGAGCGCCAAGUUCCAGAUG
.............((((((((.((.((((((.......((((((.....))))))...(((.....(((((.((((...)))).)).)))......))))))))).))...)))))))). ( -31.40)
>DroSim_CAF1 156961 120 - 1
GAGAGUAAUAUCGAUUUGGAAAGGAGCCUGAUCAUAAACUUUGGAUACUCCGAAGCAAGGCAGGAAGUACUGGAUUGGGGCUUGAGAUAUAAGAAAGCCUCGAGGGCCAAGUUCCAGAUG
.............((((((((..(.((((((((.....((((((.....)))))).....(((......)))))))(((((((...........)))))))..)))))...)))))))). ( -36.90)
>DroYak_CAF1 173236 120 - 1
GAGAGUAGUAUUACAUUGGAAAGGAACUUGAUCACCGGCACAGGAGACCCCGAGGCAAGAAUGGAAAUCCAGAAAUGGGGCUUGAGAUAUAACAAAGCCUCGAGGGCCAAGUUCGAGAUG
.......................(((((((.((.((......)).))(((((((((...........((((....))))..(((........))).)))))).))).)))))))...... ( -33.30)
>consensus
GAGAGUAAUAUCGAUUUGGAAAGGAGCUUGAUCAUAAACUUUGGAUACUCCGAAGCAAGGCAGGAAGUACUGGAUUGGGGCUUGAGAUAUAAGAAAGCCUCGAGGGCCAAGUUCCAGAUG
......................((((((((............((.....))...((....(((......)))..(((((((((...........)))))))))..))))))))))..... (-21.86 = -22.87 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:51 2006