Locus 7024

Sequence ID 3L_DroMel_CAF1
Location 19,000,091 – 19,000,188
Length 97
Max. P 0.665020
window11390

overview

Window 0

Location 19,000,091 – 19,000,188
Length 97
Sequences 6
Columns 111
Reading direction reverse
Mean pairwise identity 78.21
Mean single sequence MFE -26.25
Consensus MFE -15.86
Energy contribution -16.83
Covariance contribution 0.97
Combinations/Pair 1.26
Mean z-score -1.58
Structure conservation index 0.60
SVM decision value 0.28
SVM RNA-class probability 0.665020
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 19000091 97 - 23771897
CUUUUGUGUUUC--UGCCAUCGUGAAGGGUAUUAUGUGUCUGUCGUUGUCAUUGGAUA------AUAU-----ACAUUUCCGGCUACGCAAUCGCGAGAGACACCCUUCA-
.....(((((((--((((..(.....)((....((((((.....((((((....))))------))))-----))))..)))))..(((....)))))))))))......- ( -24.70)
>DroSec_CAF1 133678 97 - 1
CUUUUGUGUUUC--UGCCUUCGUGAAGGGUAUUAUGUGUCUGUCGUUGCCGAUGGAUA------AUAU-----ACAUUUCCGGCUACGCAACCGCGAGAGACACCCUUCA-
.....(((((((--((((...(.((((.((((....(((((((((....)))))))))------..))-----)).))))))))..(((....)))))))))))......- ( -30.20)
>DroSim_CAF1 139028 97 - 1
CUUUUGUGUUUC--UGCCUUCGUGAAGGGUAUUAUGUGUCUGUCGUUGUCGUUGGAUA------AUAU-----ACAUUUCCGGCAACGCAAUCGCGAGAGACACCCUUCA-
.....(((((((--((((((.....)))))....((((..((.((((((((.((....------....-----.))....))))))))))..))))))))))))......- ( -28.60)
>DroEre_CAF1 134962 93 - 1
CUUUU-CGUUUC--UGCCUCUGUGAAGGGUAUUAUGUGUCUGUCGUUGUCGUUGGA---------UAU-----ACAUUUCCGGCUACGCAAUCGCAAAAGACACCCUUCA-
.....-......--........((((((((.((.((((..((.(((....((((((---------...-----.....)))))).)))))..)))).))...))))))))- ( -25.80)
>DroYak_CAF1 155181 94 - 1
CUUUU-UGUUUC--UGCCACCGUGAAGGGUAUUAUGUGUCUGUCGUUGUCGUUGGA---------UAU-----ACAUUUCCGGCUACGCAAUUGCAAAAGACACCCUUCAU
.....-......--.......(((((((((.......((((((.(((((.((((((---------...-----.....))))))...))))).))...))))))))))))) ( -25.31)
>DroAna_CAF1 131365 99 - 1
UGCUU-UGUUUUCAUUGAGGUGUUGAGGGUAUUGUGUGUCUGUUUUUGUGGAUAUAUAUAGUAAGUAUACCCGACAUUUCCGGCUACGCAAUUACGACAU-----------
(((..-..........((((((((..((((((((((((((..(....)..))))))))........)))))))))))))).(....))))..........----------- ( -22.90)
>consensus
CUUUU_UGUUUC__UGCCUUCGUGAAGGGUAUUAUGUGUCUGUCGUUGUCGUUGGAUA______AUAU_____ACAUUUCCGGCUACGCAAUCGCGAGAGACACCCUUCA_
......................((((((((.((.((((..((.(((.((((.............................)))).)))))..)))).))...)))))))). (-15.86 = -16.83 +   0.97)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:46 2006