| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,995,784 – 18,995,874 |
| Length | 90 |
| Max. P | 0.699865 |
| Location | 18,995,784 – 18,995,874 |
|---|---|
| Length | 90 |
| Sequences | 4 |
| Columns | 90 |
| Reading direction | reverse |
| Mean pairwise identity | 84.52 |
| Mean single sequence MFE | -14.58 |
| Consensus MFE | -12.10 |
| Energy contribution | -12.10 |
| Covariance contribution | -0.00 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.61 |
| Structure conservation index | 0.83 |
| SVM decision value | 0.35 |
| SVM RNA-class probability | 0.699865 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18995784 90 - 23771897 AAUUUCCAGCAGCUGCUUUAAAAAGUGGCGCUCCGAAAUGUUUUGCUUACAUAUUUUUUUUUUUUUUUGUGUUUAGCUUAAGGCAGCUUA ..........(((((((((((.(((..(.((........)).)..)))(((((..............))))).....))))))))))).. ( -19.94) >DroSec_CAF1 129527 74 - 1 AAUUUCCAGCAGCUGCUUUAAAAAGUGGCGCUCCGAAAUGUUUUGCUUAC----UUUUUUUGUUUUUUGUUUUUAGCU------------ .(((((.(((.((..(((....)))..)))))..))))).....(((.((----..............))....))).------------ ( -12.84) >DroSim_CAF1 134315 69 - 1 AAUUUCCAGCAGCUGCUUUAAAAAGUGGCGCUCCGAAAUGUUUUGCUUAC----UUUUU-----UUUUGUUUUUAGCU------------ .(((((.(((.((..(((....)))..)))))..))))).....(((.((----.....-----....))....))).------------ ( -13.30) >DroEre_CAF1 130776 73 - 1 AAUUUCCAGCAGCUGCUUUAAAAAGUGGCGCUCCGAAAUGUUUUGCUUAC----UUUUUGU-UUUAUUUUUUUUAGCU------------ .(((((.(((.((..(((....)))..)))))..))))).....(((...----.......-............))).------------ ( -12.25) >consensus AAUUUCCAGCAGCUGCUUUAAAAAGUGGCGCUCCGAAAUGUUUUGCUUAC____UUUUUUU_UUUUUUGUUUUUAGCU____________ .(((((.(((.((..(((....)))..)))))..)))))................................................... (-12.10 = -12.10 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:45 2006