Locus 7021

Sequence ID 3L_DroMel_CAF1
Location 18,989,714 – 18,989,806
Length 92
Max. P 0.841468
window11387

overview

Window 7

Location 18,989,714 – 18,989,806
Length 92
Sequences 6
Columns 101
Reading direction forward
Mean pairwise identity 80.48
Mean single sequence MFE -15.58
Consensus MFE -10.17
Energy contribution -10.70
Covariance contribution 0.53
Combinations/Pair 1.07
Mean z-score -2.05
Structure conservation index 0.65
SVM decision value 0.75
SVM RNA-class probability 0.841468
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18989714 92 + 23771897
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCUUU-AGCUUGCUUUCUUGUUUUUCCUUACAUUUUUUAUGUUG--------CCCACC
....((((((((((....)))((..((((...(...(((...((....-.))..)))..)..)))).)).............)))))--------)).... ( -16.40)
>DroPse_CAF1 130418 98 + 1
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCCUU-AGCUGC-UUUCCCACUUCCCCUUCCCCUUCCCCACUGGCCCCCUUCCCCA-C
....((((((((((((..........))))))))).((((........-))))..-..............................)))..........-. ( -14.00)
>DroSec_CAF1 123637 88 + 1
CUUUGGCAACAAAGUUAACUUGAUUGAACUU----UGGCUUUGCCUUU-AGCUGCCUUUCUUGUUUUCCCUUACAUUUUUUAUGUUG--------CCCACC
....((((((((((((..........)))))----)(((...((....-.)).)))...........................))))--------)).... ( -16.80)
>DroSim_CAF1 128410 93 + 1
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCUUUAAGCUGCCUUUCUUGUUUUCCCUUACAUUUUUUAUGUUG--------CCCACC
....((((((((((....)))....((((...(...(((...((......)).)))...)..))))................)))))--------)).... ( -17.70)
>DroAna_CAF1 121200 89 + 1
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCUUU-AGCCGCUUUUCUUGUUUU--CGUAUAUUUUUU-UCUUA--------CCCACC
....((((((((((((..........))))))))).((((........-)))))))...........--............-.....--------...... ( -14.60)
>DroPer_CAF1 131715 98 + 1
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCCUU-AGCUGC-UUUCCCACUUCCCCUUCCCCUUCCCCACUGGCCCCCUUCCCCA-C
....((((((((((((..........))))))))).((((........-))))..-..............................)))..........-. ( -14.00)
>consensus
CUUUGGCAACAAAGUUAACUUGAUUGAACUUUGUUUGGCUUUGCCUUU_AGCUGCCUUUCUUGUUUUCCCUUACAUUUUUUAUCUUG________CCCACC
....((((((((((((..........))))))))).(((...))).....)))................................................ (-10.17 = -10.70 +   0.53)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:43 2006