Locus 7019

Sequence ID 3L_DroMel_CAF1
Location 18,979,060 – 18,979,168
Length 108
Max. P 0.781378
window11384

overview

Window 4

Location 18,979,060 – 18,979,168
Length 108
Sequences 5
Columns 108
Reading direction forward
Mean pairwise identity 87.84
Mean single sequence MFE -32.86
Consensus MFE -24.02
Energy contribution -24.18
Covariance contribution 0.16
Combinations/Pair 1.23
Mean z-score -2.01
Structure conservation index 0.73
SVM decision value 0.56
SVM RNA-class probability 0.781378
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18979060 108 + 23771897
GCCUCCAUGUCUUGGAAUCCCCAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAUUGUCUAAAGCUUUCACUGCAAAUGGAGGUGCGUCUUGUCUUG
....(((((((((((((((.....))))))))))))))).((.((((((((..((.((........)).))...((.......)).....))))))))...))..... ( -33.70)
>DroSec_CAF1 113136 105 + 1
GGCUCUAUGUCUUGGAAUCCACAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAGUGUCUAAAGCUUUCACUGCAAAUGGAGGUGUG---CGUCUUG
((((..(((((((((((((.....)))))))))))))))))..((((((((..((.(((......))).))...((.......)).....))))))))---....... ( -32.80)
>DroSim_CAF1 117869 105 + 1
GGCUCUAUGUCUUGGAAUCCACAAGAUUUUAGGGCGUAGCCAUCGCAUCUCAAAGUCAUCUCAAAGUGUCUAAAGCUUUCACUGCAAAUGGAGGUGUG---AGUCUUG
((((..(((((((((((((.....))))))))))))))))).(((((((((..((.(((......))).))...((.......)).....))))))))---)...... ( -35.30)
>DroEre_CAF1 114205 104 + 1
GGCUCUAUGUUUUGAAAUCCCCAAGAUUUCAGGGCGGGG-CAUCGCAUCUCAAAGUCAUCUGAAAUGGCAUAGAGCUUUCACUGCAAAUGGAGGUGUG---AGCCUUG
........(((((((((((.....)))))))))))((((-(.(((((((((...(((((.....))))).....((.......)).....))))))))---)))))). ( -37.10)
>DroYak_CAF1 129395 104 + 1
GGCUCUAUGUUUUGAAAUCCCCAACAUUUUAGGGCGGGG-CAUCGCAUCCCAAAGUCAUCUUAAAUGGUAUUCAGCUUUCACUGCAAAUGAAGGCGUG---AGUCUUG
.((((((.((.(((.......))).))..))))))((((-(.((((...((((((....)))...)))......(((((((.......))))))))))---)))))). ( -25.40)
>consensus
GGCUCUAUGUCUUGGAAUCCCCAAGAUUUUAGGGCGUGGCCAUCGCAUCUCAAAGUCAUCUCAAAUUGUCUAAAGCUUUCACUGCAAAUGGAGGUGUG___AGUCUUG
(((.(((((((((((((((.....)))))))))))))))....((((((((..((....)).............((.......)).....))))))))....)))... (-24.02 = -24.18 +   0.16)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:40 2006