| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,976,975 – 18,977,065 |
| Length | 90 |
| Max. P | 0.827799 |
| Location | 18,976,975 – 18,977,065 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | forward |
| Mean pairwise identity | 90.45 |
| Mean single sequence MFE | -33.02 |
| Consensus MFE | -27.59 |
| Energy contribution | -27.63 |
| Covariance contribution | 0.04 |
| Combinations/Pair | 1.04 |
| Mean z-score | -1.57 |
| Structure conservation index | 0.84 |
| SVM decision value | 0.70 |
| SVM RNA-class probability | 0.827799 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18976975 90 + 23771897 UAUCUGGGUGGUGGUAGCCACCCGAGCGCUAAAAGCUGAAAGCUG-------AAAGCUGAGCCGGCAGAUGAGCAUUCUACGGUCUGCGGUCGCUUU .....(((((((....)))))))(((((((...(((.....))).-------..))).((.(((.(((((.((....))...)))))))))))))). ( -33.80) >DroSec_CAF1 111090 90 + 1 UAUCUGGGUGGUGGUAGCCACCCGAGCGCUAAAAGCCGAAAGCUG-------AAAGCUGAGCCGGCAGAUGAGCAUUCUACGGUCUGCGGUCGCUUU .....(((((((....)))))))(((((((....((((..(((..-------...)))....))))......(((..(....)..))))).))))). ( -35.60) >DroSim_CAF1 115805 97 + 1 UAUCUGGGUGGUGGUAGCCACCCGAGCGCUAAAAGCCGAAAGCUGAAAGCUGAAAGCUGAGCCGGCAGAUGAGCAUUCUACGGUCUGCGGUCGCUUU .....(((((((....)))))))(((((((....((((...(((...(((.....))).)))))))......(((..(....)..))))).))))). ( -37.50) >DroEre_CAF1 112114 83 + 1 UAUCUGGGUGCUGGUAGCCACCCGAGCGCUAAAAGC-------UG-------AAAGCUGAGCCGGCAGAUGAGCAUUCUACGGUCUGCGGUCGCUUU .....((((((.....).)))))(((((((...(((-------..-------...))).)))(.((((((.((....))...)))))).)..)))). ( -26.40) >DroYak_CAF1 127323 83 + 1 UAUCUGGGUGGUGGUAGCCACCCGAGCGCUAAGAGC-------UG-------AAAGCUGAGCCGGCGGAUGAGCAUUCUAUGGUCUGCGGUCGCUUU .....(((((((....)))))))(((((((...(((-------..-------...))).)))(.((((((.(........).)))))).)..)))). ( -31.80) >consensus UAUCUGGGUGGUGGUAGCCACCCGAGCGCUAAAAGC_GAAAGCUG_______AAAGCUGAGCCGGCAGAUGAGCAUUCUACGGUCUGCGGUCGCUUU .....(((((((....)))))))(((((((...(((...................))).)))(.((((((.((....))...)))))).)..)))). (-27.59 = -27.63 + 0.04)
| Location | 18,976,975 – 18,977,065 |
|---|---|
| Length | 90 |
| Sequences | 5 |
| Columns | 97 |
| Reading direction | reverse |
| Mean pairwise identity | 90.45 |
| Mean single sequence MFE | -27.20 |
| Consensus MFE | -22.66 |
| Energy contribution | -23.26 |
| Covariance contribution | 0.60 |
| Combinations/Pair | 1.00 |
| Mean z-score | -1.29 |
| Structure conservation index | 0.83 |
| SVM decision value | -0.02 |
| SVM RNA-class probability | 0.525048 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18976975 90 - 23771897 AAAGCGACCGCAGACCGUAGAAUGCUCAUCUGCCGGCUCAGCUUU-------CAGCUUUCAGCUUUUAGCGCUCGGGUGGCUACCACCACCCAGAUA ..((((((((((((..((.....))...)))).))).)).(((..-------.(((.....)))...)))))).((((((......))))))..... ( -30.10) >DroSec_CAF1 111090 90 - 1 AAAGCGACCGCAGACCGUAGAAUGCUCAUCUGCCGGCUCAGCUUU-------CAGCUUUCGGCUUUUAGCGCUCGGGUGGCUACCACCACCCAGAUA ..((((((((((((..((.....))...)))).))).)).(((..-------.(((.....)))...)))))).((((((......))))))..... ( -30.20) >DroSim_CAF1 115805 97 - 1 AAAGCGACCGCAGACCGUAGAAUGCUCAUCUGCCGGCUCAGCUUUCAGCUUUCAGCUUUCGGCUUUUAGCGCUCGGGUGGCUACCACCACCCAGAUA ..(((((..((.(((((((((.......)))).))).)).))..)).(((...(((.....)))...)))))).((((((......))))))..... ( -31.10) >DroEre_CAF1 112114 83 - 1 AAAGCGACCGCAGACCGUAGAAUGCUCAUCUGCCGGCUCAGCUUU-------CA-------GCUUUUAGCGCUCGGGUGGCUACCAGCACCCAGAUA .....((.(((.(((((((((.......)))).))).))(((...-------..-------)))....))).))(((((........)))))..... ( -23.60) >DroYak_CAF1 127323 83 - 1 AAAGCGACCGCAGACCAUAGAAUGCUCAUCCGCCGGCUCAGCUUU-------CA-------GCUCUUAGCGCUCGGGUGGCUACCACCACCCAGAUA ..(((....(((..........)))..........(((.(((...-------..-------)))...)))))).((((((......))))))..... ( -21.00) >consensus AAAGCGACCGCAGACCGUAGAAUGCUCAUCUGCCGGCUCAGCUUU_______CAGCUUUC_GCUUUUAGCGCUCGGGUGGCUACCACCACCCAGAUA ((((((((((((((..((.....))...)))).))).)).)))))................((.....))....((((((......))))))..... (-22.66 = -23.26 + 0.60)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:36 2006