Locus 7014

Sequence ID 3L_DroMel_CAF1
Location 18,970,217 – 18,970,324
Length 107
Max. P 0.773442
window11376

overview

Window 6

Location 18,970,217 – 18,970,324
Length 107
Sequences 6
Columns 117
Reading direction forward
Mean pairwise identity 75.50
Mean single sequence MFE -43.57
Consensus MFE -24.61
Energy contribution -25.50
Covariance contribution 0.89
Combinations/Pair 1.05
Mean z-score -1.70
Structure conservation index 0.56
SVM decision value 0.54
SVM RNA-class probability 0.773442
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18970217 107 + 23771897
GUGGUGGAUGUGCUCGUGCACAUAGCGGUGUAUCAUGGAGCUGGAGGCGCUGGUGUCCAGUUCCACCUCCACC---UGCUGGCCAGA---UUCCUCAGCCUCC-AACGACUGCU---
(..((.(((((((....))))))(((((((.....((((((((((.((....)).))))))))))....))))---.)))(((.((.---...))..)))...-..).))..).--- ( -44.40)
>DroVir_CAF1 118425 111 + 1
AUGGUGUAUGUGCUCGUGCACAUAGCGAUGUAUCAUGGAGCUGGAGGCGCUCGUGUCCAGAUCCACGUCUGCGGCCAGCUGGGCCGAUGGCUCGUCGGCAUCC-UUGGCCG-U----
...((.(((((((....)))))))))(((((.....(((.(((((.((....)).))))).)))))))).((((((((....(((((((...)))))))....-)))))))-)---- ( -51.80)
>DroPse_CAF1 111736 107 + 1
AUGGUGGAUGUGCUCGUGCACAUAGCGAUGGAUCAUCGAGCUGGAGGCACUGGUGUCCAGCUCCACCUCUUGC---UCUUGCCC------CUCAUCGGCCUCC-AGGGCCUGCUGCU
..(((((((((((....))))))..(((((...)))))(((((((.((....)).))))))))))))....((---....))..------......((((...-..))))....... ( -42.20)
>DroMoj_CAF1 118543 111 + 1
AUGAUGUAUGUGCUCGUGCACAUAGCGAUGUAUCAUGGAGCUGGACGCACUAGUGUCCAGAUCAACAUCUGCCGCCAGCUGCGCGGACGGCUCCUCCAGAUCCU-UGGCCG-U----
......(((((((....)))))))((.(.(.(((.(((((((((((((....))))))))..........((((((.((...)))).))))..)))))))).).-).))..-.---- ( -42.80)
>DroAna_CAF1 102537 107 + 1
AUGGUGGAUGUGCUCGUGCACAUAGCGAUGGAUCAUUGAGCUGGAGGCACUGGUGUCCAGUUCCACCUCCGCG---GCUUGGCCCUC---CUCCACUCCCUCC-AGCAACUGCU---
.(((.((((((((....)))))).(.((.(((...(..(((((((((.(((((...)))))....)))))..)---)))..)...))---))))....)).))-)((....)).--- ( -38.00)
>DroPer_CAF1 113055 107 + 1
AUGGUGGAUGUGCUCGUGCACAUAGCGAUGGAUCAUCGAGCUGGAGGCACUGGUGUCCAGCUCCACCUCUUGC---UCUUGCCC------CUCAUCGGCCUCC-AGGGCCUGCUGCU
..(((((((((((....))))))..(((((...)))))(((((((.((....)).))))))))))))....((---....))..------......((((...-..))))....... ( -42.20)
>consensus
AUGGUGGAUGUGCUCGUGCACAUAGCGAUGGAUCAUGGAGCUGGAGGCACUGGUGUCCAGAUCCACCUCUGCC___UCCUGCCC_GA___CUCCUCGGCCUCC_AGGGCCUGCU___
..((((.((((((....))))))..............((((((((.((....)).)))))))))))).................................................. (-24.61 = -25.50 +   0.89)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:32 2006