Locus 7013

Sequence ID 3L_DroMel_CAF1
Location 18,966,177 – 18,966,278
Length 101
Max. P 0.594804
window11375

overview

Window 5

Location 18,966,177 – 18,966,278
Length 101
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 68.45
Mean single sequence MFE -21.74
Consensus MFE -9.61
Energy contribution -9.25
Covariance contribution -0.36
Combinations/Pair 1.41
Mean z-score -1.69
Structure conservation index 0.44
SVM decision value 0.12
SVM RNA-class probability 0.594804
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18966177 101 + 23771897
GAAC---GGCCAAAAAAAUUAACGUUCCUGAAAAUCUGCAAGCCAAAUAAAAUAACCC--------AUUUU--------UGUUUUGGUUUGCAUACUUUGGCAGCUUUAUUCUUAAAUUG
((((---(..............)))))(((..((..((((((((((((((((......--------..)))--------)).)))))))))))....))..)))................ ( -22.24)
>DroSec_CAF1 100722 100 + 1
AAAA---UGCC-AAAUAAUAUACGUUCUUGAAAAUCAGCAAGUCAAACAACACAACCC--------AUUUU--------UGUUUUGGCUUGCAUAUUUCGGCAGUUUUAUUCUUAAAUUG
....---((((-(((((...........((.....))(((((((((((((........--------....)--------)).)))))))))).))))).))))................. ( -20.20)
>DroSim_CAF1 104697 100 + 1
GAAG---UACA-AGCUAGUUGACUUUCCUGAAAAUCUGCAAGCCAAACAACACAACCC--------AUUUU--------UGUUUUGGUUUGCAUAUUGCGGCAGUUUUAUUCUUAAAUUG
((((---(.((-(.....)))))))).(((..(((.((((((((((((((........--------....)--------)).))))))))))).)))....)))................ ( -19.90)
>DroEre_CAF1 101546 99 + 1
------------AAAU-AAAUAUGUUUUUGAUAAUCUGCGAGCUGAUCACUACAACCCAUUCGACCAUUUU--------AGUUUUGGUUUGCACAUUUCGGCAGCUUUAAUUUAAAAUUU
------------...(-((((..(((.((((.(((.(((((((..(..((((..................)--------))).)..))))))).))))))).)))....)))))...... ( -15.17)
>DroYak_CAF1 116631 116 + 1
CAAAAGUGGCCAAAAU-CCAUACGAUUUUGAAAAUCUGAAAGCUGACUAUGACAACCC-UUCGACCAUUGUCGAAGGUAUGUUUUGGUUUGCACAUUGCGGUAGUUUUAUUCUU--AUUG
.((((.((.(((((((-(.....)))))))...........((.(((((.((((..((-((((((....))))))))..)))).))))).)).......).)).))))......--.... ( -31.20)
>consensus
GAAA___GGCC_AAAUAAUAUACGUUCUUGAAAAUCUGCAAGCCAAACAACACAACCC________AUUUU________UGUUUUGGUUUGCAUAUUUCGGCAGUUUUAUUCUUAAAUUG
...........................(((..(((.(((((((((((...................................))))))))))).)))....)))................ ( -9.61 =  -9.25 +  -0.36)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:31 2006