| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,965,302 – 18,965,422 |
| Length | 120 |
| Max. P | 0.946084 |
| Location | 18,965,302 – 18,965,422 |
|---|---|
| Length | 120 |
| Sequences | 6 |
| Columns | 120 |
| Reading direction | forward |
| Mean pairwise identity | 76.22 |
| Mean single sequence MFE | -41.18 |
| Consensus MFE | -23.11 |
| Energy contribution | -23.06 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.50 |
| Mean z-score | -2.15 |
| Structure conservation index | 0.56 |
| SVM decision value | 1.36 |
| SVM RNA-class probability | 0.946084 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18965302 120 + 23771897 UCUGUAGAGGAUCGGCCGAGGCCUUGGCAACAUGAGCCUUCAACACCUUUCCCUUCCAUUUGUAUCCAUUCAGGAUCUCCAAGGCCCUUUGUUGAUCCUCCUGACUGCGGAAGCACACAA ..(((.((((((((((.((((((((((.....((......)).....................((((.....))))..)))))).)))).)))))))))).....(((....))).))). ( -39.60) >DroVir_CAF1 113839 120 + 1 UGUGCAGUGGAUCAGCGGAUGCUUUGGCUGCCAUUGCUUUAAGGAUCUUUCCCUUCCACUUGUAGCCAUUGAGCGUUUCUAGGGCGCGCUGCUGGUCUGCUUGGCUGCGAAAGCACACAA ((((.((..(((((((((...(..(((((((...((....((((.......)))).))...)))))))..).(((((.....))))).)))))))))..))....(((....))))))). ( -46.30) >DroGri_CAF1 99148 120 + 1 UGUGCAGAGGAUCGGCAGAUGCUUUGGCCAACAUGGCCUUGAGCACUUUUCCCUUCCACUUGUAUCCGUUGAGCGUUUCCACAGCCCGUUGCUGAUCCGCCUGGCUGCGAAAACAUACAA .((((((.(((..((.((((((((.((((.....))))..))))).))).))..))).).))))).........((((.(.(((((....((......))..))))).).))))...... ( -36.40) >DroMoj_CAF1 113536 120 + 1 UCUGUAACGGAUCGGCCGAUGCUUUAGCUGCCACCGCUUUCAGUAUCCUGCCCUUCCACUUGUACCCGUUGAGCGUUUCCAGUGCUCGCUGCUGAUCCGCCUGACUGCGAAAGCAAACGA ........(((..(((.((((((..(((.......)))...))))))..)))..)))..((((....(((..(((..((((((....))))..))..)))..)))(((....))).)))) ( -36.60) >DroAna_CAF1 97629 120 + 1 UCUGGAGUGGAUCGGCGGAGGCUUUGGCAGCGAUGGCCUUAAGGACUUUUCCCUUCCACUUAUAGCCAUUUAAAGUCUCCAAGGCUCUUUGCUGAUCCUCCAAAGUACGGAAGCAAACGA ..((((..(((((((((((((((((((..((((((((..((((...............))))..))))))....))..))))))).)))))))))))))))).....((........)). ( -46.06) >DroPer_CAF1 108304 120 + 1 UCUGCAGUGGAUCGGCGGAUGCCUUUGCUGCCAGCGCCUUCAAUACCCUUCCCUUCCACUUGUAGCCGUUCAGUGUCUCCAAGGCUCUCUGCUGGUCCUCCUGGGUGCGAAAGCACACAA ....(((.(((((((((((.((((((((((..((((.((.(((................))).)).))))))))).....)))))..)))))))))))..))).((((....)))).... ( -42.09) >consensus UCUGCAGUGGAUCGGCGGAUGCUUUGGCUGCCAUCGCCUUCAGCACCUUUCCCUUCCACUUGUAGCCAUUGAGCGUCUCCAAGGCUCGCUGCUGAUCCGCCUGACUGCGAAAGCACACAA ........((((((((((..(((((((..((...........................................))..)))))))...)))))))))).......(((....)))..... (-23.11 = -23.06 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:30 2006