Locus 7011

Sequence ID 3L_DroMel_CAF1
Location 18,964,048 – 18,964,139
Length 91
Max. P 0.863569
window11373

overview

Window 3

Location 18,964,048 – 18,964,139
Length 91
Sequences 6
Columns 93
Reading direction forward
Mean pairwise identity 75.97
Mean single sequence MFE -23.12
Consensus MFE -15.08
Energy contribution -15.75
Covariance contribution 0.67
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.65
SVM decision value 0.84
SVM RNA-class probability 0.863569
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18964048 91 + 23771897
GGAGACGUAGACCAGACGAUUGAUGGCAUCGGCUGAUCGAAUUGCGGCUAUCGAGCGGUGGUCUGAAAA-AAA-CAAAUAAGAAAUUUGGAAA
(....).(((((((..((.((((((((....((..........)).)))))))).)).)))))))....-...-(((((.....))))).... ( -25.90)
>DroVir_CAF1 112623 88 + 1
GGAAACAUAGACCAGACGGUUGAUGGCACUCGCUGAGCGUAUGGCGGCUAUGGAACGAUUGUCUGUAAUAGAA-CGAA--AAAAAUAUUAA--
(....)......(((((((((((((((...((((........)))))))))....))))))))))........-....--...........-- ( -20.50)
>DroGri_CAF1 97851 79 + 1
GGAAACAUAAACCAGACGCUUGAUGGCACUCGCCGAGCGUAUGGCGGCUAUGGAACGAUUGUCUGCAAGGGAUUCGAA-------U-------
.....((((..(((.((((((...(((....))))))))).)))....))))...(((...(((....)))..)))..-------.------- ( -19.90)
>DroSec_CAF1 98533 90 + 1
GGAGACGUAGACCAGACGAUUGAUGGCAUCUGCUGAUCGAAUUGCGGCUAUAGAGCGGUGGUCUGAAA--AAA-CAAAUAAGACAUUUUUAAA
(....).((((((...(((((...(((....))))))))....((.(((....))).))))))))...--...-................... ( -21.20)
>DroSim_CAF1 102640 90 + 1
GGAGACGUAGACCAGACGAUUGAUGGCAUCUGCUGAUCGGAUUGCGGCUAUCGAGCGGUGGUCUGAAA--AAG-CAAAUAAGACAUUUUGAAA
(....).(((((((..((.(((((((((((((.....)))))....)))))))).)).)))))))...--...-((((........))))... ( -26.00)
>DroEre_CAF1 99372 85 + 1
AGAGACGUAGACCAGACGAUUGAUGGCAUCUGCUGAUCGGAUUGCGGCUAUCGACCGGUGGUCUGAAA--AAG-UAAAUUCAACUUUU-----
.......(((((((..((.(((((((((((((.....)))))....)))))))).)).))))))).((--(((-(.......))))))----- ( -25.20)
>consensus
GGAGACGUAGACCAGACGAUUGAUGGCAUCUGCUGAUCGAAUUGCGGCUAUCGAGCGGUGGUCUGAAA__AAA_CAAAUAAGACAUUUU_A__
(....).(((((((..((.((.(((((...(((..........)))))))).)).)).)))))))............................ (-15.08 = -15.75 +   0.67)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:29 2006