Locus 7010

Sequence ID 3L_DroMel_CAF1
Location 18,959,019 – 18,959,121
Length 102
Max. P 0.924704
window11372

overview

Window 2

Location 18,959,019 – 18,959,121
Length 102
Sequences 5
Columns 102
Reading direction reverse
Mean pairwise identity 91.74
Mean single sequence MFE -31.08
Consensus MFE -25.14
Energy contribution -25.22
Covariance contribution 0.08
Combinations/Pair 1.09
Mean z-score -1.89
Structure conservation index 0.81
SVM decision value 1.16
SVM RNA-class probability 0.924704
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18959019 102 - 23771897
GCAUCACCGAUCCUCUGCCGUGGCAUUCAUGGCAGUCGCCGGCCCAGAAGUCGCAGCAGCGACAAAAACAGCAACCGCUGCUUAAACCGCCUCAAUUGCAAC
(((....(((....((((((((.....)))))))))))..(((......(((((....))))).....((((....))))........))).....)))... ( -33.00)
>DroSec_CAF1 93479 102 - 1
GCAUCACCGAUCCUCUGCCGUGGCAUUCAUGGCAGUCGCCGGCCCAGAAGUCGCAGCUGCGAGAAAAACAGCAACCGCUGCUACAACCGCCUCAAUUGCAAC
(((....(((....((((((((.....)))))))))))..(((...(..((.((((((((..........)))...))))).))..).))).....)))... ( -30.30)
>DroSim_CAF1 97580 102 - 1
GCAUCACCGAUCCUCUGGCGUGGCAUUCAUGGCAGUCGCCGGCCCAGAAGUCGCAGCAGCGACAAAAGCAGCAAUCGCUGCUAAAACCGCCUCAAUUGCAAC
(((.............((((..((.......))...))))(((......(((((....)))))...((((((....))))))......))).....)))... ( -34.50)
>DroEre_CAF1 94446 99 - 1
GCAUCACCGAUCCUCUGCCGUGGCACUCAUGGCAGCCGC---CCCAGAAGUCGCAGCAGCGGCAAAAACAGCAACAGCUGCUAAAAACGCCUCAAUUGCACC
(((....((((..((((..(((((..........)))))---..)))).)))).((((((.((.......))....))))))..............)))... ( -29.00)
>DroYak_CAF1 109399 99 - 1
GCAUCACCGAUCCUCUGCUGUGGCACUCAUGGCAGUUGC---CCCAGAAGUCGCAGCAGCGACAAAAACAGCAACAGCUGCUAAAACCGCCUCAAUUGCACC
(((.........(.((((((((((......(((....))---)......)))))))))).).......((((....))))................)))... ( -28.60)
>consensus
GCAUCACCGAUCCUCUGCCGUGGCAUUCAUGGCAGUCGCCGGCCCAGAAGUCGCAGCAGCGACAAAAACAGCAACCGCUGCUAAAACCGCCUCAAUUGCAAC
(((...........((((((((.....))))))))..((..........(((((....))))).....((((....))))........))......)))... (-25.14 = -25.22 +   0.08)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:28 2006