Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 2,098,480 – 2,098,575 |
Length | 95 |
Max. P | 0.869895 |
Location | 2,098,480 – 2,098,575 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | forward |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -26.45 |
Consensus MFE | -19.39 |
Energy contribution | -20.03 |
Covariance contribution | 0.64 |
Combinations/Pair | 1.31 |
Mean z-score | -2.25 |
Structure conservation index | 0.73 |
SVM decision value | 0.55 |
SVM RNA-class probability | 0.778671 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2098480 95 + 23771897 UUAAGAAUGUUCACAAUUUUUCAGACACUAUCUUGGCUGCUCCAGCGUAUAAUCCUUGCCGGGAUCAGCCAGGAUAAUGCAUAUC-GCACACAUGG ......((((..................(((((((((((.(((.(((.........)))..))).))))))))))).(((.....-))).)))).. ( -26.30) >DroGri_CAF1 145790 93 + 1 AUAUAGUUAUUCACAAUU--CUGUACAUUAUCGCAGCUAUCUUUGCCUGUAAUCCUGGGCAGGAUAAGCCAGGAUAAUGCACUUGAUCACAUUUG- .................(--(.((.(((((((...((((((((.((((........))))))))).)))...))))))).))..)).........- ( -20.90) >DroSec_CAF1 150000 95 + 1 UUGAGAAUGUUCACGAUUUUUCAGACACUAUCUUGGCUGCUCCAGCGUAUAAUCCUUGCCAGGAUCAGCCAGGAUAAUGCACAUC-GCACACAUGG (((((((..........)))))))....(((((((((((.(((.(((.........)))..))).))))))))))).(((.....-)))....... ( -27.40) >DroSim_CAF1 153169 95 + 1 UUGAGAAUGUUCACGAUUUUUCAGACACUAUCUUGGCUGCUCCAGCGUAUAAUCCUUGCCAGGAUCAGCCAGGAUAAUGCACAUC-GCACACAUGG (((((((..........)))))))....(((((((((((.(((.(((.........)))..))).))))))))))).(((.....-)))....... ( -27.40) >DroEre_CAF1 154411 95 + 1 UUGAGAGUGUCCACAAAUUUUCAGACACUAUCUUGGCUGCUCCAGCGUAUAAUCCUUGCCAGGAUCAGCCAGGAUAAUGCACAUG-ACACACAUGG .(((((((........)))))))(.((.(((((((((((.(((.(((.........)))..))).))))))))))).))).((((-.....)))). ( -31.70) >DroYak_CAF1 148149 94 + 1 UUGAGAAUG-CCACUAUUUUUUAGACACUAUCUUAGCUGCUCCAGCGUAAAAUCCUUGCCAGGAUCAGCCAGGAUAAUGCAUAUG-GCACACAUGG .......((-((((((.....))).((.((((((.((((.(((.(.((((.....))))).))).)))).)))))).))....))-)))....... ( -25.00) >consensus UUGAGAAUGUUCACAAUUUUUCAGACACUAUCUUGGCUGCUCCAGCGUAUAAUCCUUGCCAGGAUCAGCCAGGAUAAUGCACAUC_GCACACAUGG (((((((..........))))))).((.(((((((((((.(((.(((.........)))..))).))))))))))).))................. (-19.39 = -20.03 + 0.64)
Location | 2,098,480 – 2,098,575 |
---|---|
Length | 95 |
Sequences | 6 |
Columns | 96 |
Reading direction | reverse |
Mean pairwise identity | 83.01 |
Mean single sequence MFE | -30.30 |
Consensus MFE | -22.65 |
Energy contribution | -22.90 |
Covariance contribution | 0.25 |
Combinations/Pair | 1.25 |
Mean z-score | -2.70 |
Structure conservation index | 0.75 |
SVM decision value | 0.87 |
SVM RNA-class probability | 0.869895 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 2098480 95 - 23771897 CCAUGUGUGC-GAUAUGCAUUAUCCUGGCUGAUCCCGGCAAGGAUUAUACGCUGGAGCAGCCAAGAUAGUGUCUGAAAAAUUGUGAACAUUCUUAA ..((((.(((-(((..((((((((.((((((...(((((...........)))))..)))))).)))))))).......)))))).))))...... ( -30.50) >DroGri_CAF1 145790 93 - 1 -CAAAUGUGAUCAAGUGCAUUAUCCUGGCUUAUCCUGCCCAGGAUUACAGGCAAAGAUAGCUGCGAUAAUGUACAG--AAUUGUGAAUAACUAUAU -.............((((((((((.(((((.(((.((((..(.....).))))..)))))))).))))))))))..--.................. ( -24.10) >DroSec_CAF1 150000 95 - 1 CCAUGUGUGC-GAUGUGCAUUAUCCUGGCUGAUCCUGGCAAGGAUUAUACGCUGGAGCAGCCAAGAUAGUGUCUGAAAAAUCGUGAACAUUCUCAA ..((((.(((-(((..((((((((.((((((.(((.(((...........)))))).)))))).)))))))).......)))))).))))...... ( -32.40) >DroSim_CAF1 153169 95 - 1 CCAUGUGUGC-GAUGUGCAUUAUCCUGGCUGAUCCUGGCAAGGAUUAUACGCUGGAGCAGCCAAGAUAGUGUCUGAAAAAUCGUGAACAUUCUCAA ..((((.(((-(((..((((((((.((((((.(((.(((...........)))))).)))))).)))))))).......)))))).))))...... ( -32.40) >DroEre_CAF1 154411 95 - 1 CCAUGUGUGU-CAUGUGCAUUAUCCUGGCUGAUCCUGGCAAGGAUUAUACGCUGGAGCAGCCAAGAUAGUGUCUGAAAAUUUGUGGACACUCUCAA (((((....(-((.(.((((((((.((((((.(((.(((...........)))))).)))))).)))))))))))).....))))).......... ( -31.50) >DroYak_CAF1 148149 94 - 1 CCAUGUGUGC-CAUAUGCAUUAUCCUGGCUGAUCCUGGCAAGGAUUUUACGCUGGAGCAGCUAAGAUAGUGUCUAAAAAAUAGUGG-CAUUCUCAA ...((.((((-(((..((((((((.((((((.(((.(((...........)))))).)))))).))))))))..........))))-)))...)). ( -30.90) >consensus CCAUGUGUGC_CAUGUGCAUUAUCCUGGCUGAUCCUGGCAAGGAUUAUACGCUGGAGCAGCCAAGAUAGUGUCUGAAAAAUUGUGAACAUUCUCAA .((((...........((((((((.((((((.(((.(((...........)))))).)))))).)))))))).........))))........... (-22.65 = -22.90 + 0.25)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:53 2006