Locus 7009

Sequence ID 3L_DroMel_CAF1
Location 18,958,304 – 18,958,399
Length 95
Max. P 0.984228
window11371

overview

Window 1

Location 18,958,304 – 18,958,399
Length 95
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 91.89
Mean single sequence MFE -31.30
Consensus MFE -26.97
Energy contribution -27.98
Covariance contribution 1.00
Combinations/Pair 1.14
Mean z-score -2.64
Structure conservation index 0.86
SVM decision value 1.97
SVM RNA-class probability 0.984228
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18958304 95 + 23771897
AUAAGCACGCGUCUUUAGUCGCUCCAGAACCGCUCGUGACUUUCAGAGG-CGCAAACAAGAUCACGUGUUGUACUGGGGCCCGACUAAAGAUCAUU
..........(((((((((((((((((.((.((.((((((((.......-.......))).))))).)).)).)))))))..)))))))))).... ( -33.84)
>DroSec_CAF1 92797 95 + 1
AUAAGCACGCGUCUUUAGUCGCUCCAGAACCGCUCGUGACUUUCAGAGG-CGCAAACAAGAUCACGUGUUGUACUGGGGCCAGACUAAAGAUCAUC
..........(((((((((((((((((.((.((.((((((((.......-.......))).))))).)).)).)))))))..)))))))))).... ( -33.84)
>DroSim_CAF1 96864 95 + 1
AUAAGCACGCGUCUUUAGUCGCUCCAGAACCGCUCGUGACUUUCAGAGG-CGCAAACAAGAUCACGUGUUGUACUGGGGCCCGACUAAAGAUCAUC
..........(((((((((((((((((.((.((.((((((((.......-.......))).))))).)).)).)))))))..)))))))))).... ( -33.84)
>DroEre_CAF1 93752 95 + 1
AUAAGCACGCGUCUUUAGUCGCUCCCAAACCGCUCGUGACUUUCACAGG-CGCAAACAAGAUCACGUGUUGUACUGCGGCCCGACUAAAGAUCAUC
..........(((((((((((..((......((..(((.....)))..)-)(((.((((.((...)).))))..)))))..))))))))))).... ( -28.70)
>DroYak_CAF1 108741 95 + 1
AUAAGCACGCGUCUUUAGUCGCUCCGAAACCGCUCGUGACUUUCACAGG-CGCAAACAAGAUCACGUGUUAUACUGCGGCCCGACUAAAGAUCAUC
..........(((((((((((..(((....(((..(((.....)))..)-))..((((........))))......)))..))))))))))).... ( -28.20)
>DroAna_CAF1 90614 96 + 1
AUAAGCACGCGUUUUUAGUCGCCCAAGUAUCGCUCGUGACUCUCUAAGAUCGCAAACAAGAUCACGUGUUGUGCUGGGUCUCGACUAAAGAUCACC
..........(((((((((((((((.((((.((.(((((.(((...............)))))))).)).))))))))...))))))))))).... ( -29.36)
>consensus
AUAAGCACGCGUCUUUAGUCGCUCCAGAACCGCUCGUGACUUUCAGAGG_CGCAAACAAGAUCACGUGUUGUACUGGGGCCCGACUAAAGAUCAUC
..........(((((((((((((((((.((.((.((((((((...............))).))))).)).)).)))))))..)))))))))).... (-26.97 = -27.98 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:27 2006