Locus 7008

Sequence ID 3L_DroMel_CAF1
Location 18,955,072 – 18,955,162
Length 90
Max. P 0.759504
window11370

overview

Window 0

Location 18,955,072 – 18,955,162
Length 90
Sequences 6
Columns 90
Reading direction forward
Mean pairwise identity 89.48
Mean single sequence MFE -23.78
Consensus MFE -20.83
Energy contribution -20.68
Covariance contribution -0.15
Combinations/Pair 1.17
Mean z-score -1.63
Structure conservation index 0.88
SVM decision value 0.50
SVM RNA-class probability 0.759504
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18955072 90 + 23771897
ACGGUCCACUCUCCAUUUUCCGUUUAUGGGCCGUGUUUCGGGCCCAGCAUUUUCAUGGCUGUUUUUACAUUCGUCACGGGGCCAUCAAAU
..(((((...................((((((........)))))).........(((((((....)))...))))..)))))....... ( -23.90)
>DroSec_CAF1 89578 90 + 1
ACGGUCCACUCUCCAUUUUCCGUUUAUGGGCCGUGUUUCGGGCUCAGCAUUUUCAUGGCUGUUUUUACAUUUGUCAUGGGGCCAUCAAAU
..(((((...................((((((........)))))).......(((((((((....)))...)))))))))))....... ( -25.20)
>DroSim_CAF1 93630 90 + 1
ACGGUCCACUCUCCAUUUUCCGUUUAUGGGCCCUGUUUCGGGCUCAGCAUUUUCAUGGCUGUUUUUACAUUCGUCACGGGGCCAUCAAAU
..(((((...................(((((((......))))))).........(((((((....)))...))))..)))))....... ( -24.20)
>DroEre_CAF1 90546 90 + 1
AUGGCCCACUCUCCAUUCUCCGUUUAUGGGCCGUGUUCUGGGCUCAGCAUUUUCAUGGCUGUUUUUACAUUCGUCACGGGGCCAUCAAGU
(((((((.....((((.........))))((((((......((...)).....))))))...................)))))))..... ( -24.70)
>DroYak_CAF1 105540 90 + 1
AUGGCCCGCUCUCCAUUUUCCGUUUAUGGGCCGUGUUUUGGGCUCAACAUUUUCAUGGCUGUUUUUACAUUCGUCACGGGGCCAUCAAAU
(((((((.....((((.........))))((((((...((.......))....))))))...................)))))))..... ( -24.90)
>DroAna_CAF1 87503 79 + 1
AUGGCCCACUCUCCGUUUUCCGUUUAUGGGU-----------UUCAGCAUUUUCAUGGCUGGUUUUACAUUCGUCACGGGGCCAUCAAAU
(((((((.....((((.........))))((-----------.(((((.........)))))....))..........)))))))..... ( -19.80)
>consensus
ACGGCCCACUCUCCAUUUUCCGUUUAUGGGCCGUGUUUCGGGCUCAGCAUUUUCAUGGCUGUUUUUACAUUCGUCACGGGGCCAUCAAAU
..(((((...................((((((........)))))).........(((((((....)))...))))..)))))....... (-20.83 = -20.68 +  -0.15)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:26 2006