Locus 7007

Sequence ID 3L_DroMel_CAF1
Location 18,946,921 – 18,947,032
Length 111
Max. P 0.586324
window11369

overview

Window 9

Location 18,946,921 – 18,947,032
Length 111
Sequences 4
Columns 111
Reading direction forward
Mean pairwise identity 80.26
Mean single sequence MFE -24.72
Consensus MFE -15.95
Energy contribution -16.32
Covariance contribution 0.38
Combinations/Pair 1.12
Mean z-score -1.70
Structure conservation index 0.65
SVM decision value 0.11
SVM RNA-class probability 0.586324
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18946921 111 + 23771897
UGGCCACAUUCCUACCACGCCAAACCGCCCAACCGCCCAACCGCCCAAUCGCCCACGCCCCCUGGCACCCCGCUGAUUUGUGGCCAAAAGCGGGCAUUCUUAAAGCCUUAA
((((((((..........((......((......))......))..((((((....(((....))).....)).)))))))))))).....((((.........))))... ( -24.30)
>DroSec_CAF1 81707 95 + 1
UGGCCACAUUUCUACCACGCCAAGCCGGCCAACCG----------------CCCACGCCCCCUGGCACCCCGCUGAUUUGUGGCCAAAAGCGGGCAUUCUUAAAGCCUUCA
((((((((..((......((((.((.(((.....)----------------))...))....))))........))..))))))))...(.((((.........)))).). ( -29.64)
>DroSim_CAF1 85014 95 + 1
UGGCCACAUUCCUACCACCCCAAGCCGCCCAACCA----------------CCCACGCCCCCUGGCACCCCGCUGAUUUGUGGCCAAAAGCGGGCAUUCUUAAAGCCUUCA
((((((((..............(((.(......).----------------.....(((....))).....)))....))))))))...(.((((.........)))).). ( -20.97)
>DroEre_CAF1 82609 86 + 1
UGGCCACAUUCCUGCCACCCCUA-----CCACCCC----------------GCCACAC----CGCCACCCCGCUGAUUUGUGGCCAAGGGCGGGCAUUCUUAAAGCCUUAA
.(((........((((..((((.-----.......----------------(((((((----.((......)).)...))))))..))))..))))........))).... ( -23.99)
>consensus
UGGCCACAUUCCUACCACCCCAAGCCGCCCAACCG________________CCCACGCCCCCUGGCACCCCGCUGAUUUGUGGCCAAAAGCGGGCAUUCUUAAAGCCUUAA
.(((....................................................(((....)))..((((((..((((....))))))))))..........))).... (-15.95 = -16.32 +   0.38)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:25 2006