Locus 7006

Sequence ID 3L_DroMel_CAF1
Location 18,936,112 – 18,936,212
Length 100
Max. P 0.507824
window11368

overview

Window 8

Location 18,936,112 – 18,936,212
Length 100
Sequences 6
Columns 106
Reading direction forward
Mean pairwise identity 77.95
Mean single sequence MFE -28.78
Consensus MFE -15.95
Energy contribution -19.29
Covariance contribution 3.33
Combinations/Pair 1.04
Mean z-score -1.61
Structure conservation index 0.55
SVM decision value -0.05
SVM RNA-class probability 0.507824
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18936112 100 + 23771897
CAUGCACAAUGGCUGCAGA---AAUGAGCUGAGCUCCACUGAACUGCACCACCGCCCCAUCC---GAAAGCGGGGUGUCUGCCAUACUCGUAUGUAUAUGUGCAUA
.(((((((..((((((((.---...((((...)))).......)))))....((((((...(---....).))))))...)))((((......)))).))))))). ( -35.70)
>DroVir_CAF1 82044 89 + 1
CAAGCACAAAGGCAGGAAAACUGCUGAUCUGAUCUAAAACCC----------AGCCACAUGCUGUGCAAAUGGUCUGCUCGCCAUAUGAAC----AUACACGC---
...((((...(((((.....))))).................----------(((.....)))))))..(((((......)))))......----........--- ( -19.10)
>DroSec_CAF1 70965 93 + 1
CAUGCACAAUGGCUGCAGA---AAUGAGCUGAGCUCCACUGAACUGCA---CCGUCCCAUCC---GAAAGCGGGGUGUCUCCCAUACUCGU----AUAUGUGCAUA
.(((((((((((.(((((.---...((((...)))).......)))))---))))(((...(---....)..)))................----...))))))). ( -27.40)
>DroSim_CAF1 71636 93 + 1
CAUGCACAAUGGCUGCAGA---AAUGAGCUGAGCUCCACUGAACUGCA---CCGUCCCAUCC---GAAAGCGGGGUGUCUCCCAUACUCGU----AUAUGUGCAUA
.(((((((((((.(((((.---...((((...)))).......)))))---))))(((...(---....)..)))................----...))))))). ( -27.40)
>DroEre_CAF1 71960 93 + 1
CAUGCACAAUGGCUGCUGA---AAUGAGCUGAGCUCCACUGAACUGCA---CGGCCCCAUCC---GAAAGCGGGGUGUCUGCCAUACUCGU----GUAUGUGCAUU
.(((((((.(((((((...---...((((...)))).........)))---.((((((...(---....)..))).))).))))(((....----)))))))))). ( -29.06)
>DroYak_CAF1 91235 93 + 1
CAUGCACAAUGGCUGCAGA---AAUGAGCUGAGCUCCACUGAACUGCA---CCGCCCCAUCC---GAAAGCGGGGUGUCCGCCAUACUCGU----AUAUGUGCAUA
.(((((((((((((((((.---...((((...)))).......)))))---.((((((...(---....).))))))...)))))......----...))))))). ( -34.00)
>consensus
CAUGCACAAUGGCUGCAGA___AAUGAGCUGAGCUCCACUGAACUGCA___CCGCCCCAUCC___GAAAGCGGGGUGUCUGCCAUACUCGU____AUAUGUGCAUA
.((((((((((((.((((.......((((...)))).......)))).....((((((.............))))))...))))).............))))))). (-15.95 = -19.29 +   3.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:25 2006