Locus 7003

Sequence ID 3L_DroMel_CAF1
Location 18,927,169 – 18,927,273
Length 104
Max. P 0.800170
window11362

overview

Window 2

Location 18,927,169 – 18,927,273
Length 104
Sequences 5
Columns 118
Reading direction reverse
Mean pairwise identity 85.60
Mean single sequence MFE -17.14
Consensus MFE -13.16
Energy contribution -13.68
Covariance contribution 0.52
Combinations/Pair 1.16
Mean z-score -1.87
Structure conservation index 0.77
SVM decision value 0.61
SVM RNA-class probability 0.800170
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18927169 104 - 23771897
UUGAAAUUCCUCUUAAAUUAAAAUAAUAC--------------CCUGCACAAUACCACGCUCAACACCUCUUUUCCAAAGCGGAACGGACCACCUCUUCUGGAUUUCAUUUAUUCAUU
.((((((((....................--------------...((..........))........(((.((((.....)))).)))...........)))))))).......... ( -11.70)
>DroSec_CAF1 61911 104 - 1
UUGAAAUUCCUCUUAAAUUAAAAUAAUAC--------------CGAGCACGAUACCACGCUCAACACCUCUUCUCCAAGGCGGAACGGACCACCUCUUUUGGAUUUCAUUUAUUCAUU
.((((((((....................--------------.((((..........))))...............(((.((......)).))).....)))))))).......... ( -16.30)
>DroSim_CAF1 62544 105 - 1
UUGAAAUUCCUCUUAAAUUAAAAUAAUACC-------------CGAGCACAAUACCACGCUCAACACCUCUUCUCCAAGGCGGAACGGACCACCUCUUUUGGAUUUCAUUUAUUCAUU
.((((((((.....................-------------.((((..........))))...............(((.((......)).))).....)))))))).......... ( -16.30)
>DroEre_CAF1 62899 116 - 1
UUGAAAUUCCCCUUAAAUUAAAAUAAUACCUUGCACUACUUCCCGAGCACAAUACCUCGCUCAACACCUCUGUUCCAAGGCGGAACGGACCACCUCUU-AGGAUUUCAU-UAUUCAUU
.((((((((...................................((((..........))))......((((((((.....)))))))).........-.)))))))).-........ ( -22.50)
>DroYak_CAF1 61748 117 - 1
UUGAAAUUCCUCAUAAAUUAAAAUAAUACCUUGCACUGCCUUUCGAGCACAAUACUUCGCUCAACACCUUCUUUCUAAGGCGGAACGGACCACCUCUU-UGGAUUUAAUUUAUUCAUU
............((((((((((................((.(((((((..........))))..(.((((......)))).)))).)).(((......-))).))))))))))..... ( -18.90)
>consensus
UUGAAAUUCCUCUUAAAUUAAAAUAAUACC_____________CGAGCACAAUACCACGCUCAACACCUCUUUUCCAAGGCGGAACGGACCACCUCUU_UGGAUUUCAUUUAUUCAUU
.((((((((...................................((((..........))))......(((.((((.....)))).)))...........)))))))).......... (-13.16 = -13.68 +   0.52)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:19 2006