Locus 7002

Sequence ID 3L_DroMel_CAF1
Location 18,921,237 – 18,921,345
Length 108
Max. P 0.610717
window11361

overview

Window 1

Location 18,921,237 – 18,921,345
Length 108
Sequences 6
Columns 118
Reading direction forward
Mean pairwise identity 81.84
Mean single sequence MFE -26.69
Consensus MFE -18.14
Energy contribution -17.95
Covariance contribution -0.19
Combinations/Pair 1.23
Mean z-score -1.59
Structure conservation index 0.68
SVM decision value 0.16
SVM RNA-class probability 0.610717
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18921237 108 + 23771897
CAAGAAC---AAUUGUGUACUGC-AC--GGCAAUGCGUUGAAAUUUAUGAUUUAUUUGAAAAGAAAGUACAUUGUGCUCUGCGCAAAUAAAUCACACUAAAGAUCCUGCC----GCCC
.......---....(((.....)-))--(((...(((..((..(((((((((((((((...(((..((((...)))))))...)))))))))))...))))..)).))).----))). ( -23.70)
>DroVir_CAF1 60001 103 + 1
CAACAAC---AAUUGCGUGUUGCUGC--GGCAGUGCGUUGAAAUUUAUGAUUUAUUUGAAAAGAAAGUACAUUGUGCGCUGCCGAAAUAAAUCACACCAAAGACGCUG----------
.......---....((((.(((.((.--((((((((..........(..((.(((((.......))))).))..)))))))))((......)).)).)))..))))..---------- ( -22.90)
>DroPse_CAF1 60104 111 + 1
UGAGAGG--ACAUUGCGUACUGC-AGAGAGCAGUGCGUUGAAAUUUAUGAUUUAUUUCAAAAGAAAGUACAUUGUGCUCUGCCAAAAUAAAUCACACUAAAGAUGCUGGC----UGGC
..((((.--(((.((((((((((-.....))))))))(((((((.........))))))).........)).))).))))((((......(((........)))......----)))) ( -30.50)
>DroYak_CAF1 55275 108 + 1
CAAUAGC---AAUUGUGUACUGC-AC--GGCGGUGCGUUGAAAUUUAUGAUUUAUUUGAAAAGAAAGUACAUUGUGCUCUGUCCAAAUAAAUCACACUAAAGAUGUUGCC----AGCA
.....((---....(((.....)-))--((((..(((((........(((((((((((...(((..((((...)))))))...))))))))))).......)))))))))----.)). ( -27.66)
>DroAna_CAF1 54165 115 + 1
CAACAACAUAGAUGGCUCAGUGC-AA--GGCAGUGCGUUGAAAUUUAUGAUUUAUUUGAAAAGAAAGUACAUUGUGCUUUGCCAAAAUAAAUCACACUAAAGAUGCUGGCAGGCAGCU
.............((((....((-..--.((...(((((........((((((((((......(((((((...)))))))....)))))))))).......)))))..))..)))))) ( -24.86)
>DroPer_CAF1 60929 111 + 1
UGAGAGG--ACAUUGCGUACUGC-AGAGAGCAGUGCGUUGAAAUUUAUGAUUUAUUUCAAAAGAAAGUACAUUGUGCUCUGCCAAAAUAAAUCACACUAAAGAUGCUGGC----UGGC
..((((.--(((.((((((((((-.....))))))))(((((((.........))))))).........)).))).))))((((......(((........)))......----)))) ( -30.50)
>consensus
CAAGAAC___AAUUGCGUACUGC_AC__GGCAGUGCGUUGAAAUUUAUGAUUUAUUUGAAAAGAAAGUACAUUGUGCUCUGCCAAAAUAAAUCACACUAAAGAUGCUGGC____AGCC
..............(((((((((......))))))))).........((((((((((....(((..((((...)))))))....))))))))))........................ (-18.14 = -17.95 +  -0.19)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:18 2006