Locus 70

Sequence ID 3L_DroMel_CAF1
Location 275,918 – 276,028
Length 110
Max. P 0.768722
window99

overview

Window 9

Location 275,918 – 276,028
Length 110
Sequences 5
Columns 111
Reading direction forward
Mean pairwise identity 94.85
Mean single sequence MFE -29.48
Consensus MFE -28.44
Energy contribution -27.80
Covariance contribution -0.64
Combinations/Pair 1.12
Mean z-score -1.15
Structure conservation index 0.96
SVM decision value 0.52
SVM RNA-class probability 0.768722
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 275918 110 + 23771897
AAAACGCGCACGCGGCCACACUAACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAA-AAAUGCACUUAUAGGUAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
...((((((.(((.(((.........(((..(((((.......))))).....((....))...-...)))(((....)))...))).))).))))))............. ( -29.60)
>DroSec_CAF1 48259 110 + 1
CAAACGCGCACGCGGCCACACUAACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAA-AAAUGCACUUAUAGGUAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
...((((((.(((.(((.........(((..(((((.......))))).....((....))...-...)))(((....)))...))).))).))))))............. ( -29.60)
>DroSim_CAF1 43860 110 + 1
GAAACGCGCACGCGGCCACACUAACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAA-AAAUGCACUUAUAGGUAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
(((((((((.(((.(((.........(((..(((((.......))))).....((....))...-...)))(((....)))...))).))).))))))..)))........ ( -30.00)
>DroEre_CAF1 48070 110 + 1
CCAAUGCGCACGCGGUCACACC-ACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAAAAAAUGCACUUAAAAGCAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
....((((..(((((.....))-.((((...(((((.......))))))))).)))..))))......(((........)))..(((((.((....))....))))).... ( -28.10)
>DroYak_CAF1 44422 111 + 1
CCAACGCGCACGCGGUCACACCAACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAAAAAAUGCACUUAAAAGCAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
....((((..(((((.....))..((((...(((((.......))))))))).)))..))))......(((........)))..(((((.((....))....))))).... ( -30.10)
>consensus
CAAACGCGCACGCGGCCACACUAACAGCAAAUAUUGAAAAAAACAAUAGUUGAGCGGACGCGAA_AAAUGCACUUAUAGGUAACGGCGGUGCGCGCGUCUUUCCGCCCCCU
...((((((.(((.(((.......((((...(((((.......))))))))).((....)).......(((........)))..))).))).))))))............. (-28.44 = -27.80 +  -0.64)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:31:32 2006