Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 31,818 – 31,931 |
Length | 113 |
Max. P | 0.709077 |
Location | 31,818 – 31,931 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 92.63 |
Mean single sequence MFE | -24.63 |
Consensus MFE | -19.91 |
Energy contribution | -20.03 |
Covariance contribution | 0.12 |
Combinations/Pair | 1.17 |
Mean z-score | -2.43 |
Structure conservation index | 0.81 |
SVM decision value | 0.37 |
SVM RNA-class probability | 0.709077 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 31818 113 - 23771897 UAUUUAACCUCACCUUCCGACGGAUCAACGUAAGUUACUAACCGUUGGGAUCCUUAAUAAGUUGUCACAGCCACAAAGGUAAACAAAAAUAAAAACAAAACAAGCGGUGUACA ..........(((((((((((((...(((....))).....)))))))))...........((((....(((.....)))..))))...................)))).... ( -22.80) >DroSec_CAF1 20996 113 - 1 UAUUUAACCUCACCUUCCGACGGAUCAAAGUAAGUUACUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACUCAAAUAAAAACAAAACAAGUGAGGUAAA ......(((((((.(((((((((.....((((...))))..)))))))))..(((.(((.((((...))))......))).)))...................)))))))... ( -26.10) >DroSim_CAF1 22628 113 - 1 UAUUUAAUCUCACCUUCCGACGGAUCAAAGUAAGUUGCUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACGCAAAUAAAAACAAAACAAGUGAGGUAAA ......(((((((.(((((((((.....(((.....)))..))))))))).((((.(((.((((...))))......))).))))..................)))))))... ( -25.00) >consensus UAUUUAACCUCACCUUCCGACGGAUCAAAGUAAGUUACUAACCGUUGGGAUCGUUAAUCAGCUGUCACAGCCACAAAGGUAAACACAAAUAAAAACAAAACAAGUGAGGUAAA ......(((((((.(((((((((.....((((...))))..)))))))))..........((((...))))................................)))))))... (-19.91 = -20.03 + 0.12)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:29:45 2006