Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,904,494 – 18,904,587 |
Length | 93 |
Max. P | 0.740928 |
Location | 18,904,494 – 18,904,587 |
---|---|
Length | 93 |
Sequences | 6 |
Columns | 93 |
Reading direction | forward |
Mean pairwise identity | 87.46 |
Mean single sequence MFE | -27.42 |
Consensus MFE | -23.04 |
Energy contribution | -24.13 |
Covariance contribution | 1.09 |
Combinations/Pair | 1.12 |
Mean z-score | -1.93 |
Structure conservation index | 0.84 |
SVM decision value | 0.45 |
SVM RNA-class probability | 0.740928 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18904494 93 + 23771897 UUUUGGACCCCGUUUCUCACCCCGCCCACAUGAGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCG ..........((((.................((((((((....))))))))((((((((.((((......)))).))))))))..)))).... ( -27.10) >DroSec_CAF1 39408 92 + 1 UUUUCGGCC-CCUUUCUCAUCCCGCCCACUUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUCCUCAUAUGCCACGACGCUCA .....(((.-............(((((....)))))......((((.....(((((((.....)))))))))))......))).......... ( -23.50) >DroSim_CAF1 39994 93 + 1 UUUUCAGCCCCCUUUCUCACCCCGCCCACUUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGGCUUCCUCAUAUGCCACGACGCUCA ......(((....((((.....(((((....)))))......)))).....)))....((((....((((..........))))..))))... ( -23.50) >DroEre_CAF1 39213 93 + 1 UUUUGGGCCCGGUUUCUCACCCCGCCCACAUGAGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCA ...(((((..(((.....)))..)))))...((((((((....))))))))((((((((.((((......)))).)))))))).......... ( -35.80) >DroYak_CAF1 38512 93 + 1 UUUUGGGCCCCGUUUCCCACCCCGCUCACAUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGUUCA ...(((((.(((((...(((((.........)))))...))))).......((((((((.((((......)))).)))))))).....))))) ( -29.80) >DroAna_CAF1 37160 93 + 1 CACUGGGCGCAGAUUCUUGACACGCCUAUAUGGGCGUUUAAUGGCACACUCGGCGUAUGCGUAAUAUGACUGGCUCAUAUGCCACGACGUUGA .....((((..(....((((.((((((....))))))))))..........((((((((.((..........)).)))))))).)..)))).. ( -24.80) >consensus UUUUGGGCCCCGUUUCUCACCCCGCCCACAUGGGUGUUUAAUGGAACACUCGGCGUAUGCGUAAUAUGCCUUGCUCAUAUGCCACGACGCUCA ...(((((...............)))))...((((((((....))))))))((((((((.((((......)))).)))))))).......... (-23.04 = -24.13 + 1.09)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:14 2006