Locus 6998

Sequence ID 3L_DroMel_CAF1
Location 18,903,876 – 18,903,975
Length 99
Max. P 0.964968
window11356

overview

Window 6

Location 18,903,876 – 18,903,975
Length 99
Sequences 6
Columns 105
Reading direction forward
Mean pairwise identity 73.42
Mean single sequence MFE -30.05
Consensus MFE -18.30
Energy contribution -19.58
Covariance contribution 1.28
Combinations/Pair 1.24
Mean z-score -1.92
Structure conservation index 0.61
SVM decision value 1.57
SVM RNA-class probability 0.964968
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18903876 99 + 23771897
AUUCACCAUUUGCCA-UUUUGCCAUUUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGGCAAUAUGGGCGGAAGUCUUCCCCA-----
...............-(((((((...(((((....((((((.....)))))).((((.(((......))))))))))))....)))))))..........----- ( -30.50)
>DroSec_CAF1 38593 95 + 1
----ACCAUUUGCCA-GUUUGCCAUUUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGUCAAAAUGGGCGGAAGUCUUCCCCA-----
----...........-.....((((((((.......(((((.....)))))((((((.(((......)))))))))))))))))((....))........----- ( -27.10)
>DroSim_CAF1 39200 95 + 1
----ACCAUUUGCCA-GUUUGCCAUUUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGGCAAAAUGGGCGGAAGUCUUCCCCA-----
----...........-.....((((((((((....((((((.....)))))).((((.(((......)))))))))))))))))((....))........----- ( -32.60)
>DroEre_CAF1 38440 83 + 1
----GCCA-----------------UUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGGCAAAAUGGGCGGAAGUCUC-CCCAGGAGC
----.((.-----------------((((((....((((((.....)))))).((((.(((......))))))))))))).((((.((....)).-))))))... ( -30.90)
>DroYak_CAF1 37746 77 + 1
-----CCA-----------------UUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGGCAAAAGAGGCGGAAGUCUC-UCCA-----
-----...-----------------((((((....((((((.....)))))).((((.(((......)))))))))))))((((((....)))))-)...----- ( -32.30)
>DroAna_CAF1 36414 90 + 1
----GCCAUCAGACGGGGUAGACCCUCUACCAUUUAACAUCCAACCGUCGCACGCACACUCGAUUAGGCGGUGGCGAAAAAUUUUCAGGGG------CAA-----
----(((.((.((((((((((.....))))).............)))))...(((.(((.((......))))))))...........))))------)..----- ( -26.91)
>consensus
____ACCAUUUGCCA_GUUUGCCAUUUUGCCAUUUUGCGAUUUGCCGUCGCACGCACACUCGAUUAGGAGGUGUGGCAAAAUGGGCGGAAGUCUU_CCCA_____
........................(((((((....((((((.....))))))(((((.(((......))))))))........)))))))............... (-18.30 = -19.58 +   1.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:13 2006