| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,897,997 – 18,898,109 |
| Length | 112 |
| Max. P | 0.544741 |
| Location | 18,897,997 – 18,898,109 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 119 |
| Reading direction | reverse |
| Mean pairwise identity | 84.73 |
| Mean single sequence MFE | -33.43 |
| Consensus MFE | -25.02 |
| Energy contribution | -23.83 |
| Covariance contribution | -1.19 |
| Combinations/Pair | 1.19 |
| Mean z-score | -1.90 |
| Structure conservation index | 0.75 |
| SVM decision value | 0.02 |
| SVM RNA-class probability | 0.544741 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18897997 112 - 23771897 CUAUAUCCAUAUGGACCGCUAACCGGCGGCACACGUUGCUGUCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGU-GU-----UUGGGGAAAUG- .....(((.(((((.((.......(((((((.....)))))))(((((...))))).........)))))))(((..(((((((.....)))))))..)-))-----....)))....- ( -32.40) >DroVir_CAF1 31975 106 - 1 CUUUAUCCAUAUGGACCGCUAACUGGCGGCGCUCGCUGCUGUCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGCGCAAUUUACACAAUUGUAAGU-GC------------AACAA .....(((....)))..((..((.((((((....)))))))).)).(((((((((((((....)))))..........((((((.....))))))..))-))------------)))). ( -31.30) >DroGri_CAF1 24792 110 - 1 CUUUAUCCAUAUGGACCGCUAACUGGUGGCGCUCGCUGUUGUCGCAUGUUGCACGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGUUGC---------AGCAAGGA .....(((.....((.(((((.....))))).))((((((((.((.....))..(((((....))))).))))))..(((((((((((....))))))))))---------)))..))) ( -34.10) >DroWil_CAF1 42011 117 - 1 CUAUAUCCUUAUGGACCGUUAACCGGUGGCACACGCUGCUGUCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGU-AGAACAGAUGGCUAAAGG- ......((((.(((.(((((...(((..((....))..)))((((((((((...(((((....)))))..)))))..))).(((((((....)))))))-.))...))))))))))))- ( -32.70) >DroMoj_CAF1 35293 108 - 1 CUGUAUCCGUAUGGACCGCUGACGGGCGGCGCGCGCUGCUGCCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGU-GC----------GAAACGA .......(((.....(((((....)))))((((((((((....)).(((((...(((((....)))))..)))))))))).(((((((....)))))))-))----------)..))). ( -32.90) >DroAna_CAF1 30870 112 - 1 CUAUAUCCAUACGGACCGCUAACGGGCGGCACACGUUGUUGCCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGU-GU-----UUGCGGAUGGG- ((((.(((....)))((((.(((.(((((((.....)))))))((((((((...(((((....)))))..)))))..))).(((((((....)))))))-))-----).)))))))).- ( -37.20) >consensus CUAUAUCCAUAUGGACCGCUAACCGGCGGCACACGCUGCUGUCGCAUGUUGCAUGCCAAAAAUUUGGCCAUAACAAGUGCAAUUUACACAAUUGUAAGU_GC__________GAAAGG_ .....(((....)))..((.....(((((((.....)))))))((.(((((...(((((....)))))..))))).)))).(((((((....))))))).................... (-25.02 = -23.83 + -1.19)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:12 2006