Locus 6996

Sequence ID	3L_DroMel_CAF1
Location	18,891,764 – 18,891,856
Length	92
Max. P	0.784682

overview

Window 4

Location	18,891,764 – 18,891,856
Length	92
Sequences	5
Columns	92
Reading direction	forward
Mean pairwise identity	91.74
Mean single sequence MFE	-22.20
Consensus MFE	-17.20
Energy contribution	-16.88
Covariance contribution	-0.32
Combinations/Pair	1.17
Mean z-score	-1.81
Structure conservation index	0.77
SVM decision value	0.57
SVM RNA-class probability	0.784682
Prediction	RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18891764 92 + 23771897
UGGAAGCCUUCAGUGGUAAACCACUUUAAGGCACUUUUAAUUGUUUGAAAAUAAACGAGUUUUAAGGGUAAGCUUAGAAUAAUUUGUGCAGU
.....(((((.(((((....)))))..)))))(((((((((((((((....)))))))...))))))))..((.((((....)))).))... ( -22.40)
>DroSec_CAF1 26710 92 + 1
UGGAAGCAUUCAGUGGUAAACCACUUUGAGGCACAUUUAAUUGUUUGAAAAUAAACGAGUUUUAAGCGUAAGCUUAGAAUAAUUUGUGCAGU
........((((((((....))))..))))(((((.....(((((((....)))))))(((((((((....)))))))))....)))))... ( -27.00)
>DroSim_CAF1 27291 92 + 1
UGGAAGCCUUCAGUGGUAAACCACUUUGAGGCACUUUUAAUUGUUUGAAAAUAAACGAGUUUUAAGCGUAAGCUUAGAAUAAUUUGUGCAGU
.....(((((.(((((....)))))..)))))........(((((((....)))))))(((((((((....)))))))))............ ( -27.80)
>DroEre_CAF1 25820 91 + 1
UGGAAGCCUUCAGUGGUAAAGCGCUUUA-GGCACUUUUAAUUGUUUGAAAAUAAACGAGUUUUAGGGGUAGGCUUAGAAUAAUUUGUGCAGC
.....(((......)))...((((((((-((((((((((((((((((....)))))))...))))))))..))))))).......))))... ( -18.81)
>DroYak_CAF1 24632 92 + 1
UAGAAGCCUUCAGUGGUAAAACACUUUCGGGCACUUUUAAUUGUUUGAAAAUAAACGAGUUUUGGGGUUAGGUUUAGAAUCAUUUGUGCAGU
......((...((((......))))...))((((......(((((((....)))))))((((((((......)))))))).....))))... ( -15.00)
>consensus
UGGAAGCCUUCAGUGGUAAACCACUUUAAGGCACUUUUAAUUGUUUGAAAAUAAACGAGUUUUAAGGGUAAGCUUAGAAUAAUUUGUGCAGU
...........(((((....))))).....((((......(((((((....)))))))((((((((......)))))))).....))))... (-17.20 = -16.88 +  -0.32)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:11 2006