Locus 6995

Sequence ID 3L_DroMel_CAF1
Location 18,891,624 – 18,891,724
Length 100
Max. P 0.534473
window11353

overview

Window 3

Location 18,891,624 – 18,891,724
Length 100
Sequences 6
Columns 104
Reading direction forward
Mean pairwise identity 84.14
Mean single sequence MFE -26.87
Consensus MFE -16.82
Energy contribution -17.60
Covariance contribution 0.78
Combinations/Pair 1.23
Mean z-score -2.64
Structure conservation index 0.63
SVM decision value 0.00
SVM RNA-class probability 0.534473
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18891624 100 + 23771897
GCCUUCUGUUUUGGAAAGCAAUUUGCGAGGGUGAAGGGAAAGUUUCUAGCGUGA----AAAUGGAAAGUUUGACUUUGAACAGAAGCGAAUUAAAUUAAUUCAA
.(((((..(((((.(((....))).)))))..)))))....((((((..(((..----..)))....((((......))))))))))((((((...)))))).. ( -24.20)
>DroSec_CAF1 26570 100 + 1
ACCUUCUGUUUCGGAAAGCAAUUUGCGAGGGCGAGGGGAAAGUUUCUAGCGUGA----AAAUGGAAAGUUUGACUUUGAACAGAAGCGAAUUAAAUUAAUUCAA
..(((((((((((.(((....))).)))...(((((..(((.((((((......----...)))))).)))..))))))))))))).((((((...)))))).. ( -27.70)
>DroSim_CAF1 27151 100 + 1
GCCUUCUGUUUUGGAAAGCAAUUUGCGAGGGCGAAGGGAAAGUUUCUAGCGUGA----AAAUGGAAAGUUUGACUUUGAACAGAAGCGAAUUAAAUUAAUUCAA
((.((((((((((.(((....))).)))...(((((..(((.((((((......----...)))))).)))..))))))))))))))((((((...)))))).. ( -26.50)
>DroEre_CAF1 25681 99 + 1
G-CCUCUGUUUUGGAAAGCAAUUUGCGAGGGCGAAGGGAAAGUUUCUAGCGUGA----AAAUGGAAACUUUGACUUUGAACAGAAGCGAAUUAAAUUAAUUCAA
(-(.(((((((((.(((....))).)))...(((((..((((((((((......----...))))))))))..))))))))))).))((((((...)))))).. ( -30.10)
>DroYak_CAF1 24493 99 + 1
GGCUUCUGUUUUGGAAAGCAAUUUGCACGGGCGCAGGGAAAGUUUCUAGCGUGA-----AAUGGAAAGUUUGACUUUGAACAGAAGCGAAUUGAAUUAAUUCAA
.((((((((((.(..((((..(((.((...((((.((((....)))).))))..-----..)).)))))))..)...))))))))))((((((...)))))).. ( -28.40)
>DroPer_CAF1 30195 96 + 1
-ACUUCUGUUUUCAAAAGCAAUUUG-------GAAGGAAAAAGUUUUUCCGUGCAAGCAACUGAAAAGUUUUGCUCAGGACAGGAGCGGAUCGGUUGAAUUGAA
-.........(((((..(((...((-------((((((.....)))))))))))...(((((((.....(((((((.......))))))))))))))..))))) ( -24.30)
>consensus
GCCUUCUGUUUUGGAAAGCAAUUUGCGAGGGCGAAGGGAAAGUUUCUAGCGUGA____AAAUGGAAAGUUUGACUUUGAACAGAAGCGAAUUAAAUUAAUUCAA
..((((((((.......((.....)).....(((((..(((.((((((.............)))))).)))..))))))))))))).((((((...)))))).. (-16.82 = -17.60 +   0.78)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:10 2006