| Sequence ID | 3L_DroMel_CAF1 |
|---|---|
| Location | 18,870,732 – 18,870,844 |
| Length | 112 |
| Max. P | 0.599362 |
| Location | 18,870,732 – 18,870,844 |
|---|---|
| Length | 112 |
| Sequences | 6 |
| Columns | 118 |
| Reading direction | forward |
| Mean pairwise identity | 75.94 |
| Mean single sequence MFE | -32.58 |
| Consensus MFE | -22.42 |
| Energy contribution | -22.37 |
| Covariance contribution | -0.05 |
| Combinations/Pair | 1.45 |
| Mean z-score | -1.04 |
| Structure conservation index | 0.69 |
| SVM decision value | 0.13 |
| SVM RNA-class probability | 0.599362 |
| Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18870732 112 + 23771897 UAAUAUAGAA-----CU-AAGCCACGAUGUCCAACAUAACGGCGGCGGUUAUAGCCAACCGCAACAAAAAGCAUUUCCUGGGCGUCCCAGCCCCAUUGGGCUAUGUUGCCGGCGUCGG ..........-----..-........(((.....)))..(((((.(((((((((((....((........)).......((((......)))).....)))))))..)))).))))). ( -35.40) >DroVir_CAF1 4769 112 + 1 UAACGUAAAACC---GU-C--GAAAUAUGUCAAAUAUAACAGCUGCGGUAAUUGCCAACCGCAAUAAAAAGCAUUUCCUAGGCGUACCAGCGCCGCUUGGCUAUGUUGCCGGCGUGGG ..........((---((-(--(.((((((((((..........((((((........)))))).................(((((....)))))..))))).)))))..))))).).. ( -31.30) >DroPse_CAF1 10666 110 + 1 CCAUAUAGAA-----GU---ACAAAGAUGUCCAAUAUAACCGCAGCGGUAAUUGCCAACCGCAAUAAGAAACAUUUUCUGGGCGUGCCAGCGCCCUUGGGUUAUGUGGCCGGCGUGGG ((((......-----..---(((....)))(((.(((((((.(((((((........)))))....((((.....))))((((((....)))))).)))))))))))).....)))). ( -33.20) >DroWil_CAF1 12849 113 + 1 UAAAAUAGGA-----ACACAAAGAGGAUGUCCAACAUUACAGCAGCGGUAAUUGCUAAUCGCAAUAAAAAGCAUUUCCUGGGUGUGCCUGCUCCCUUGGGCUAUGUGGCCGGUGUAGG .......(((-----.(((......).))))).......(.(((.((((.(((((.....))))).....((((..((((((.((....)).)))..)))..)))).)))).))).). ( -28.50) >DroMoj_CAF1 3897 113 + 1 UAACGUAAACUC---UU-C-AGAAAAAUGUCAAAUAUAACCGCCGCGGUCAUUGCCAACCGCAAUAAAAAGCAUUUUUUGGGUGUGCCCGCACCUCUUGGCUAUGUAGCCGGCGUGGG ............---..-.-...................(((((.(((((((.(((((..((........)).......((((((....)))))).))))).)))..))))).)))). ( -29.10) >DroAna_CAF1 6262 116 + 1 -AACGUAGAAAUAAAAU-AAGCAAAUAUGUCGAACAUAACGGCAGCGGUUAUAGCCAACCGCAAUAAGAAGCAUUUCCUUGGAGUUCCAGCUCCGCUGGGAUAUGUGGCCGGCGUUGG -(((((...........-.......((((.....)))).((((.((((((......))))))........((((.((((((((((....))))))..)))).)))).))))))))).. ( -38.00) >consensus UAACAUAGAA_____AU_C_ACAAAGAUGUCCAACAUAACAGCAGCGGUAAUUGCCAACCGCAAUAAAAAGCAUUUCCUGGGCGUGCCAGCGCCCCUGGGCUAUGUGGCCGGCGUGGG .......................................((((.(((((........)))))........((((..(((((((((....))))))..)))..)))).......)))). (-22.42 = -22.37 + -0.05)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:09 2006