Locus 6992

Sequence ID 3L_DroMel_CAF1
Location 18,867,637 – 18,867,751
Length 114
Max. P 0.948309
window11350

overview

Window 0

Location 18,867,637 – 18,867,751
Length 114
Sequences 6
Columns 114
Reading direction forward
Mean pairwise identity 78.13
Mean single sequence MFE -32.32
Consensus MFE -16.70
Energy contribution -16.95
Covariance contribution 0.25
Combinations/Pair 1.25
Mean z-score -2.57
Structure conservation index 0.52
SVM decision value 1.38
SVM RNA-class probability 0.948309
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18867637 114 + 23771897
AGCAUAAGGGCCAUUCAACAGCAACAUCAACUGGUGCCCAGCGAUGGCGAGAAGGACGCUCAUGCCGAUGACCAAAAUCCCGAACUAGUUUUUCUCAAAUCCCUGUCCAAGAAA
......(((((((((.....(((.((.....)).))).....))))))(((((((((((....)).(((.......)))........))))))))).....))).......... ( -26.50)
>DroPse_CAF1 7846 114 + 1
AGCAUUAAGACCAUCCAGAAACAGCACCAGUUGGUGCCCAGCGACGAGGAGGAUGAGGCCAAUGCCAAUAAACAGAAUCCCGAGCUCAUGUUCCUAAAGUCGCUGACCAAAAAG
.......................(((((....))))).(((((((.(((((.(((((((....)))........(.....)....)))).)))))...)))))))......... ( -34.80)
>DroEre_CAF1 649 114 + 1
AGCAUAAGGACAAUACAACAGCAGCAUCAACUGGUGCCCAGCGAUGGCGAGGAGGAGGCCCACGCCAAUAACCAAAAUCCCGAACUCGUCUUUCUCAAAUCGCUGUCCAAGAAG
.......((((............(((((....)))))..((((((...(((((((((((....)))..............((....))))))))))..))))))))))...... ( -34.50)
>DroYak_CAF1 648 114 + 1
AGCAUAAGGACAAUCCAACAAAAGCAUCAACUGGUGCCCAGCGAUGGUGAGGAGGAGGCCCAUGCCAAUAACCAAAAUCCAGAACUCGUCUUUCUCAAAUCGCUGUCUAAGAAA
.......((((............(((((....)))))..((((((..((((((((((((....)))...............(....).))))))))).))))))))))...... ( -32.50)
>DroAna_CAF1 626 114 + 1
AGCAUCAAAAUAAAUCAGCAAAGGCACCAACUGGUGCCUAGCGACGGCGAGGAGGAAUCAAAUCCCCUUGAACAAAAUCCAGAGUUAGUGUUUCUAAAAUCUCUGACAAAAAAA
.................((..(((((((....))))))).)).....(((((.(((......)))))))).........(((((((((.....))))...)))))......... ( -30.80)
>DroPer_CAF1 8708 114 + 1
AGCAUUAAGACCAUCCAGAAACAGCACCAGUUGGUGCCCAGCGACGAGGAGGAUGAGGCCAAUGCCAAUAAACAGAAUCCCGAGCUCAUGUUCCUAAAGUCGCUGACCAAAAAG
.......................(((((....))))).(((((((.(((((.(((((((....)))........(.....)....)))).)))))...)))))))......... ( -34.80)
>consensus
AGCAUAAAGACAAUCCAACAACAGCACCAACUGGUGCCCAGCGACGGCGAGGAGGAGGCCAAUGCCAAUAAACAAAAUCCCGAACUCGUGUUUCUAAAAUCGCUGACCAAAAAA
.......................(((((....))))).(((((((....((((...(((....)))......(........).........))))...)))))))......... (-16.70 = -16.95 +   0.25)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:07 2006