Locus 6991

Sequence ID 3L_DroMel_CAF1
Location 18,864,812 – 18,864,932
Length 120
Max. P 0.730768
window11349

overview

Window 9

Location 18,864,812 – 18,864,932
Length 120
Sequences 4
Columns 120
Reading direction forward
Mean pairwise identity 96.25
Mean single sequence MFE -43.42
Consensus MFE -38.01
Energy contribution -38.82
Covariance contribution 0.81
Combinations/Pair 1.03
Mean z-score -1.90
Structure conservation index 0.88
SVM decision value 0.42
SVM RNA-class probability 0.730768
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18864812 120 + 23771897
GUCGUCUACGUCGAGAAGAUCCAGCGCGAGAACGCCAACGGCACCAACGUCUACGUGGGCAUCCAUCCCAGCAAGGUGCUGAUCGUCAAGCUGAAGCUCGACAAGGACCGCAAGGCCAUC
.........((((((......(((((((....)))...(((((((.(((....)))(((.......))).....)))))))........))))...))))))..((.((....))))... ( -43.40)
>DroPse_CAF1 4621 120 + 1
GUCGUCUACAUUGAGAAGAUCCAGCGCGAGAACGCCAACGGCACCAACGUCUACGUUGGAAUCCACCCCAGCAAGGUGCUGAUUGUCAAGCUCAAGCUGGACAAGGACCGCAAGGCCAUU
.((.(((......))).))((((((..(((...(.((((((((((...(....)(((((........)))))..))))))).))).)...)))..))))))...((.((....))))... ( -43.10)
>DroSec_CAF1 237 120 + 1
GUCGUCUACGUCGAGAAGAUCCAGCGCGAGAACGCCAACGGCACCAACGUCUACGUGGGCAUCCACCCCAGCAAGGUGCUGAUCGUCAAGCUGAAGCUCGACAAGGACCGCAAGGCCAUC
.........((((((......(((((((....)))...(((((((.(((....)))(((......)))......)))))))........))))...))))))..((.((....))))... ( -43.60)
>DroSim_CAF1 235 120 + 1
GUCGUCUACGUCGAGAAGAUCCAGCGCGAGAACGCCAACGGCACCAACGUCUACGUGGGCAUCCACCCCAGCAAGGUGCUGAUCGUCAAGCUGAAGCUCGACAAGGACCGCAAGGCCAUC
.........((((((......(((((((....)))...(((((((.(((....)))(((......)))......)))))))........))))...))))))..((.((....))))... ( -43.60)
>consensus
GUCGUCUACGUCGAGAAGAUCCAGCGCGAGAACGCCAACGGCACCAACGUCUACGUGGGCAUCCACCCCAGCAAGGUGCUGAUCGUCAAGCUGAAGCUCGACAAGGACCGCAAGGCCAUC
.........((((((......(((((((....)))...(((((((.(((....)))(((.......))).....)))))))........))))...))))))..((.((....))))... (-38.01 = -38.82 +   0.81)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:35:06 2006