Locus 699

Sequence ID 3L_DroMel_CAF1
Location 2,091,734 – 2,091,848
Length 114
Max. P 0.538581
window1068

overview

Window 8

Location 2,091,734 – 2,091,848
Length 114
Sequences 3
Columns 114
Reading direction reverse
Mean pairwise identity 79.38
Mean single sequence MFE -16.77
Consensus MFE -11.14
Energy contribution -10.70
Covariance contribution -0.44
Combinations/Pair 1.05
Mean z-score -1.54
Structure conservation index 0.66
SVM decision value 0.01
SVM RNA-class probability 0.538581
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 2091734 114 - 23771897
AAAUUACAACAAGAACUUUCUUUAUUUUCUUCCCCGAACAAGCCCUAUAAUUGAUUAAUCGCGUAUCAUAUUUGUUUAGAUAUGAUCCAAACGGAAGAAUUUAAGAAAGAUGUA
...............(((((((....(((((((.....(((.........))).........(.((((((((......)))))))).)....)))))))...)))))))..... ( -22.50)
>DroSec_CAF1 148334 92 - 1
-----------------UUCUUUAUUUUCUUC-GCGAACAAGCCCUAUAAUUGAAUAAUCGCAUAUCAUAUUUGUUUAGAUAUGAUCCAAACGCAAGAAC----AAAUGAUUUU
-----------------....((((((((((.-(((.....((..(((......)))...))..((((((((......)))))))).....)))))))..----)))))).... ( -13.40)
>DroSim_CAF1 151489 92 - 1
-----------------CUCUUUAUUUUCUUC-GCGAACAAGCCCUUUAAUUGAUUAAUCGCAUAUCAUAUUUGUUUAGAUAUGAUCCAAACGCAAGAAC----AAAUGAUUUU
-----------------....((((((((((.-(((.....((...((((....))))..))..((((((((......)))))))).....)))))))..----)))))).... ( -14.40)
>consensus
_________________UUCUUUAUUUUCUUC_GCGAACAAGCCCUAUAAUUGAUUAAUCGCAUAUCAUAUUUGUUUAGAUAUGAUCCAAACGCAAGAAC____AAAUGAUUUU
..........................(((((..(((..(((.........)))...........((((((((......)))))))).....))))))))............... (-11.14 = -10.70 +  -0.44)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 09:48:50 2006