Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,861,297 – 18,861,388 |
Length | 91 |
Max. P | 0.998539 |
Location | 18,861,297 – 18,861,388 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | forward |
Mean pairwise identity | 72.15 |
Mean single sequence MFE | -19.42 |
Consensus MFE | -5.86 |
Energy contribution | -5.56 |
Covariance contribution | -0.30 |
Combinations/Pair | 1.50 |
Mean z-score | -2.32 |
Structure conservation index | 0.30 |
SVM decision value | 2.08 |
SVM RNA-class probability | 0.987382 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18861297 91 + 23771897 UUAGAAUUAUUUGUAUGUAACACACAUACAUAUGUACAUAUG----------UAUAUAUAU--------GGGAAGCCAUAUAGAUUGAGUCCAGUUGAGGGACUGAUAA ...........(((((((.....)))))))..(((((....)----------))))(((((--------((....)))))))...(.(((((.......))))).)... ( -22.80) >DroSec_CAF1 26253 78 + 1 UUAGAAUUAUUUGUAUAUAACAAACAUACAUAC-----------------------UAUAU--------GGGAAGCCAUAUAGAUUGAGACCAAUUGAGCAAUUGAUAA .....((((.((((..................(-----------------------(((((--------((....))))))))((((....))))...)))).)))).. ( -15.30) >DroSim_CAF1 26805 78 + 1 UUAGAAUUAUUUGUAUAUAACACACAUACAUAC-----------------------UAUAU--------GGGAAGCCAUAUAGAUUGAGACCAAUUGAGCAAUUGAUAA .....((((.((((..................(-----------------------(((((--------((....))))))))((((....))))...)))).)))).. ( -15.30) >DroEre_CAF1 26773 109 + 1 UUGGAAUUAUUUGUAUAUAACGCACAUAUGUACAUACAUGCGAGUAUAUGUAUGUAUGUACAUAAGCAUUGAAAGCCAUAUAGAUUGAGACCAAUUGAGUGAUUGAUAA .(((..((((((((((..........((((((((((((((((......)))))))))))))))).((.......)).))))))).)))..)))((..(....)..)).. ( -28.70) >DroYak_CAF1 27312 97 + 1 UUAGAAAUUUUUGUAUAUAACGCACAUAUGUACAUA----CGAGUAUAAAAAUGUAUGUAU--------GCCAAGCCAUAUAGAUUGAGACCAGUUGAGAGAUUGAUAA .......((..(.(((((...((.(((((((((((.----...........))))))))))--------)....)).))))).)..))...(((((....))))).... ( -15.00) >consensus UUAGAAUUAUUUGUAUAUAACACACAUACAUAC_UA_____G__________U_UAUAUAU________GGGAAGCCAUAUAGAUUGAGACCAAUUGAGCGAUUGAUAA ............(((((((.......)))))))..........................................................(((((....))))).... ( -5.86 = -5.56 + -0.30)
Location | 18,861,297 – 18,861,388 |
---|---|
Length | 91 |
Sequences | 5 |
Columns | 109 |
Reading direction | reverse |
Mean pairwise identity | 72.15 |
Mean single sequence MFE | -17.17 |
Consensus MFE | -4.74 |
Energy contribution | -5.10 |
Covariance contribution | 0.36 |
Combinations/Pair | 1.23 |
Mean z-score | -2.76 |
Structure conservation index | 0.28 |
SVM decision value | 3.13 |
SVM RNA-class probability | 0.998539 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18861297 91 - 23771897 UUAUCAGUCCCUCAACUGGACUCAAUCUAUAUGGCUUCCC--------AUAUAUAUA----------CAUAUGUACAUAUGUAUGUGUGUUACAUACAAAUAAUUCUAA .....(((((.......))))).....(((((((....))--------))))).(((----------(((((....))))))))(((((...)))))............ ( -19.20) >DroSec_CAF1 26253 78 - 1 UUAUCAAUUGCUCAAUUGGUCUCAAUCUAUAUGGCUUCCC--------AUAUA-----------------------GUAUGUAUGUUUGUUAUAUACAAAUAAUUCUAA ..(((((((....)))))))......((((((((....))--------)))))-----------------------)..(((((((.....)))))))........... ( -16.30) >DroSim_CAF1 26805 78 - 1 UUAUCAAUUGCUCAAUUGGUCUCAAUCUAUAUGGCUUCCC--------AUAUA-----------------------GUAUGUAUGUGUGUUAUAUACAAAUAAUUCUAA ..(((((((....)))))))......((((((((....))--------)))))-----------------------)..((((((((...))))))))........... ( -15.90) >DroEre_CAF1 26773 109 - 1 UUAUCAAUCACUCAAUUGGUCUCAAUCUAUAUGGCUUUCAAUGCUUAUGUACAUACAUACAUAUACUCGCAUGUAUGUACAUAUGUGCGUUAUAUACAAAUAAUUCCAA ...............((((........((((((((.......((.(((((((((((((.(........).)))))))))))))...)))))))))).........)))) ( -23.04) >DroYak_CAF1 27312 97 - 1 UUAUCAAUCUCUCAACUGGUCUCAAUCUAUAUGGCUUGGC--------AUACAUACAUUUUUAUACUCG----UAUGUACAUAUGUGCGUUAUAUACAAAAAUUUCUAA ...........................((((((((...((--------(((..(((((...........----.)))))..)))))..))))))))............. ( -11.40) >consensus UUAUCAAUCGCUCAAUUGGUCUCAAUCUAUAUGGCUUCCC________AUAUAUA_A__________C_____UA_GUAUGUAUGUGUGUUAUAUACAAAUAAUUCUAA ..((((((......))))))........................................................(((((((.......)))))))............ ( -4.74 = -5.10 + 0.36)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:55 2006