Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,856,437 – 18,856,536 |
Length | 99 |
Max. P | 0.960380 |
Location | 18,856,437 – 18,856,536 |
---|---|
Length | 99 |
Sequences | 6 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 70.06 |
Mean single sequence MFE | -17.87 |
Consensus MFE | -11.20 |
Energy contribution | -11.90 |
Covariance contribution | 0.70 |
Combinations/Pair | 1.11 |
Mean z-score | -1.72 |
Structure conservation index | 0.63 |
SVM decision value | 1.51 |
SVM RNA-class probability | 0.960380 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18856437 99 - 23771897 CCCCCCCCCUUCGCGA-UU---CAGCUGGACAUAAA-AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUC---------UCCCCACACCUCCUAAAACUGAGC ............((..-..---..))(((.((....-..(((((((((......)))))))))......)).))).....---------.........(((........))). ( -20.20) >DroSec_CAF1 21417 87 - 1 C------------CGC-UU---CACCUGGCCAUAAA-AUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGGACGACCUC---------UCCCCCCACCCCCUAAAACUGAAC .------------...-..---....((.(((....-(((((((((((......)))))))))))....))).)).....---------........................ ( -20.60) >DroSim_CAF1 21682 86 - 1 C------------CGC-UU---CACCUGGCCAUAAA-AUGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUC---------UCC-CCCACUCCUUAAAACUGAAC .------------...-..---...(.(((......-(((((((((((......))))))))))).....))).).....---------...-.................... ( -20.70) >DroEre_CAF1 21800 87 - 1 C------------CGC-UU---CUCCUGGCCAUAAA-AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCAACCUA---------UACCCCCAACCCUCUAAACAGAAC .------------...-..---....(((.((....-..(((((((((......)))))))))......)).))).....---------........................ ( -18.80) >DroYak_CAF1 22131 87 - 1 C------------CGC-UU---CUCCUCGCCAUAAA-AAGACAGCCUUUUGCCUGCGGCUGUUAUCCUUUGCCCGACAUA---------UCCCCACACCCCUCUAAACUGAAC .------------...-..---....(((.((....-..(((((((..........)))))))......))..)))....---------........................ ( -10.40) >DroAna_CAF1 22274 101 - 1 CCCUCAUCUUUCGGGUGCUCGGGUCCUGACCAUAAAAAAGUCAACCGUUUGUCUGCGUCUCUC--------CCCCACCCAUGUUGUCCUUCCCCACCUGCCUCAAAAC----C ............(((((...(((....(((((..(((..(....)..)))...)).)))...)--------)).))))).............................----. ( -16.50) >consensus C____________CGC_UU___CACCUGGCCAUAAA_AAGACAGCCGUUUGUCUGCGGCUGUUAUCCUUUGCCCGACCUA_________UCCCCACACCCCUCAAAACUGAAC .......................................(((((((((......))))))))).................................................. (-11.20 = -11.90 + 0.70)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:52 2006