Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,855,608 – 18,855,706 |
Length | 98 |
Max. P | 0.685914 |
Location | 18,855,608 – 18,855,706 |
---|---|
Length | 98 |
Sequences | 4 |
Columns | 108 |
Reading direction | forward |
Mean pairwise identity | 90.16 |
Mean single sequence MFE | -27.27 |
Consensus MFE | -23.25 |
Energy contribution | -23.75 |
Covariance contribution | 0.50 |
Combinations/Pair | 1.00 |
Mean z-score | -1.54 |
Structure conservation index | 0.85 |
SVM decision value | 0.32 |
SVM RNA-class probability | 0.685914 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18855608 98 + 23771897 UCGCUUUGGG----------GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGAAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAUGCCGGAAAAA (((((((...----------((....(((((((.((..((((((.................))))).)..))..)))))))...))...)))))))............ ( -27.83) >DroSec_CAF1 20664 108 + 1 UCGCUUUGGGGGGGGGGGGGGGGGCGUUUAUGUAGGCGCGGGGCGAAAACUGAAAGGAAAAGCCCUAAAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA ..((((.((..............((((((....))))))(((((.....((....))....)))))....))))))........(((.....((....)))))..... ( -28.20) >DroSim_CAF1 20920 99 + 1 UCGCUUUGGGG---------GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA (((((((...(---------(.....(((((((.((..((((((.....(.....).....))))).)..))..)))))))...))...)))))))............ ( -27.70) >DroYak_CAF1 21490 97 + 1 UCGCUUUGGG----------GGGGCGUAUGUGUAGGCGCGGGGCGAAAAGAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAACCGAAGGCCGGAA-AA ..(((((.((----------.((((((........))))(((((.................)))))....)).....(((....))).....)).))))).....-.. ( -25.33) >consensus UCGCUUUGGG__________GGGGCGUUUAUGUAGGCGCGGGGCGAAAACAGAGAGGAAAAGCCCUAGAACCGAGCAUGGAAUACCGAAAAAGCGAAGGCCGGAAAAA ..((((.((..............((((((....))))))(((((.................)))))....))))))........(((.....((....)))))..... (-23.25 = -23.75 + 0.50)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:51 2006