Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,849,856 – 18,849,947 |
Length | 91 |
Max. P | 0.999977 |
Location | 18,849,856 – 18,849,947 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | forward |
Mean pairwise identity | 97.10 |
Mean single sequence MFE | -15.97 |
Consensus MFE | -15.05 |
Energy contribution | -15.05 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -1.85 |
Structure conservation index | 0.94 |
SVM decision value | 2.72 |
SVM RNA-class probability | 0.996627 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18849856 91 + 23771897 CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20) >DroSec_CAF1 15014 91 + 1 CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20) >DroSim_CAF1 14968 91 + 1 CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -16.20) >DroEre_CAF1 15412 91 + 1 UGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUCUUUAUUU--CAUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)(.(((...-...))).).......--.................))))))........... ( -15.90) >DroYak_CAF1 15782 91 + 1 CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU-UUUCGCUAUUUAUUU--CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)..(((...-...))).........--.................))))))........... ( -15.60) >DroAna_CAF1 16539 93 + 1 CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUUUUUUCGCUCUUUAUUUUUCG-GUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)(.(((.......))).)...........-..............))))))........... ( -15.70) >consensus CGCUUGUAUUUUUGUCAAUUUGUUGCAAAUUGUCGUGCGUUU_UUUCGCUCUUUAUUU__CGUUUUGUUUAGUAUACACGAGCUAUUAUUUAUA .((((((......(.(((((((...))))))).)..(((.......)))............................))))))........... (-15.05 = -15.05 + -0.00)
Location | 18,849,856 – 18,849,947 |
---|---|
Length | 91 |
Sequences | 6 |
Columns | 94 |
Reading direction | reverse |
Mean pairwise identity | 97.10 |
Mean single sequence MFE | -14.02 |
Consensus MFE | -13.60 |
Energy contribution | -13.60 |
Covariance contribution | -0.00 |
Combinations/Pair | 1.00 |
Mean z-score | -2.97 |
Structure conservation index | 0.97 |
SVM decision value | 5.18 |
SVM RNA-class probability | 0.999977 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18849856 91 - 23771897 UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10) >DroSec_CAF1 15014 91 - 1 UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10) >DroSim_CAF1 14968 91 - 1 UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10) >DroEre_CAF1 15412 91 - 1 UAUAAAUAAUAGCUCGUGUAUACUAAACAAAAUG--AAAUAAAGAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCA ...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10) >DroYak_CAF1 15782 91 - 1 UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG--AAAUAAAUAGCGAAA-AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((...............--.........(((...-...)))....(((((((...)))))))......)))).))). ( -14.10) >DroAna_CAF1 16539 93 - 1 UAUAAAUAAUAGCUCGUGUAUACUAAACAAC-CGAAAAAUAAAGAGCGAAAAAAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((............-.............(((.......)))....(((((((...)))))))......)))).))). ( -13.60) >consensus UAUAAAUAAUAGCUCGUGUAUACUAAACAAAACG__AAAUAAAGAGCGAAA_AAACGCACGACAAUUUGCAACAAAUUGACAAAAAUACAAGCG ...........(((.((((..........................(((.......)))....(((((((...)))))))......)))).))). (-13.60 = -13.60 + -0.00)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:45 2006