Locus 6981

Sequence ID 3L_DroMel_CAF1
Location 18,838,758 – 18,838,854
Length 96
Max. P 0.633338
window11325

overview

Window 5

Location 18,838,758 – 18,838,854
Length 96
Sequences 6
Columns 96
Reading direction forward
Mean pairwise identity 75.42
Mean single sequence MFE -36.20
Consensus MFE -20.30
Energy contribution -21.30
Covariance contribution 1.00
Combinations/Pair 1.41
Mean z-score -1.57
Structure conservation index 0.56
SVM decision value 0.21
SVM RNA-class probability 0.633338
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18838758 96 + 23771897
AGGAACUGAGGAGCAGUGGCUCUUGUCAGAGCUUUACUUUUGCCCAGGUGGGUUCCGAACUGGCCUGCAGCUUUAACGAGCUGCAGAAGAAGCUGG
.((((((.(((.((((.((((((....))))))......))))))...).))))))...(..(((((((((((....))))))))).....))..) ( -37.50)
>DroPse_CAF1 4095 96 + 1
ACGAACUGCGCAGCGGUGGCGCCUGCCAAGGCUCUACUUUUGCCCAAGUCGGCACUGAGUUGGCCUGCAGCUUCGCGGAGUUGGAGAAGAAACUGG
.((((((((((((.(((((.((((....)))).))))).))))((((.(((....))).))))...)))).))))...((((........)))).. ( -35.50)
>DroSec_CAF1 3956 96 + 1
AGGAACUGAGGAGCAGUGGCUCUUGUCAGAGCUUCACUUUUGCCCAGGUGGGUUCCGAACUGGCCUGCAGCUUCAACGAGCUGCAGAAGAAGCUGG
.....(((((((((....)))))..))))((((((........((((.(.(....).).)))).(((((((((....)))))))))..)))))).. ( -38.90)
>DroYak_CAF1 4159 96 + 1
AGGAACUAAGGAGCAGUGGCUCUUGCCAGAGCUACACUUUUGCCCAAGUGGGUUCCGAACUGGCCUGCAGCUCCAACGAACUGCAGAAGAAGCUGG
.((((((..((.(((((((((((....)))))))).....))))).....))))))...(..((((((((.((....)).)))))).....))..) ( -35.60)
>DroMoj_CAF1 2985 96 + 1
ACGAGCUUCGCACAGCUGGAGCCUGUGAGGGCAGCAUCUUCGCACAGGUGGGCACAGAGCUCGCCUGCAGCUACACGGAGCUAGAGCAAAAACUGA
...(((((((...(((((.....((((((((.....))))))))(((((((((.....))))))))))))))...))))))).............. ( -39.70)
>DroAna_CAF1 5269 96 + 1
AGGAGUUGAGGAGCGGCGGCGCCUGUGACGGUUCCACUUUUGCCCAGGUUGGCACCGAGUUGGCCUGCAGUUACGCGGAGUUGCAGAAAAAAUUGG
....(((....))).(((((.(((((((((((.........)))(((((..((.....))..)))))..)))))).)).)))))............ ( -30.00)
>consensus
AGGAACUGAGGAGCAGUGGCGCCUGUCAGAGCUCCACUUUUGCCCAGGUGGGCACCGAACUGGCCUGCAGCUUCAACGAGCUGCAGAAGAAACUGG
.........(((((..((((....))))..)))))........((((((.(((.....))).))(((((((((....)))))))))......)))) (-20.30 = -21.30 +   1.00)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:44 2006