Sequence ID | 3L_DroMel_CAF1 |
---|---|
Location | 18,838,394 – 18,838,507 |
Length | 113 |
Max. P | 0.526826 |
Location | 18,838,394 – 18,838,507 |
---|---|
Length | 113 |
Sequences | 3 |
Columns | 113 |
Reading direction | reverse |
Mean pairwise identity | 88.50 |
Mean single sequence MFE | -24.33 |
Consensus MFE | -18.26 |
Energy contribution | -18.04 |
Covariance contribution | -0.22 |
Combinations/Pair | 1.12 |
Mean z-score | -2.04 |
Structure conservation index | 0.75 |
SVM decision value | -0.01 |
SVM RNA-class probability | 0.526826 |
Prediction | RNA |
Download alignment: ClustalW | MAF
>3L_DroMel_CAF1 18838394 113 - 23771897 GAUUCGAUUCACAUUGAGGAGAAUAUAAAAGCUCUUUAAUGCGGGUUCUCCAUGACUUAUAAACACAAACCAUAUUCGUUGAGAACCGUGUCCAACUUGGUCACCCCCGAAAC ..((((...(.((((((((((..........)))))))))).)(((((((.((((..(((...........))).)))).)))))))(((.((.....)).)))...)))).. ( -30.90) >DroEre_CAF1 3668 113 - 1 AAUUGGAUUCACAUUAAGUAAAAUAAAAAAGCUUUUUAAUGCGGGUUCUUCAUGACUUAUUUAAACAAACCAUAUUCAUUGAGAACCGUGUCCAACUUGGUCACUCCCGAAAC ..((((...(.(((((((................))))))).)(((((((.((((..(((...........))).)))).)))))))(((.((.....)).)))..))))... ( -22.69) >DroYak_CAF1 3736 113 - 1 AAUUAAAUUGACAUUAAGUAGAAUAAAGAAGCUCUUUAAUGCGGGUUCUCCAUGUCUUAGUUACACAAACCAUAUUCAUUAAGAACCGUGUCCAACUUGGUCACCCCCGAAAC .........(((((...(((...(((((.....))))).))).((((((..(((.....(((.....)))......)))..)))))))))))....((((......))))... ( -19.40) >consensus AAUUAGAUUCACAUUAAGUAGAAUAAAAAAGCUCUUUAAUGCGGGUUCUCCAUGACUUAUUUACACAAACCAUAUUCAUUGAGAACCGUGUCCAACUUGGUCACCCCCGAAAC ...........(((((((................)))))))(((((((((.(((......................))).)))))))(((.((.....)).)))...)).... (-18.26 = -18.04 + -0.22)
Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:43 2006