Locus 6979

Sequence ID 3L_DroMel_CAF1
Location 18,836,521 – 18,836,615
Length 94
Max. P 0.654709
window11323

overview

Window 3

Location 18,836,521 – 18,836,615
Length 94
Sequences 6
Columns 94
Reading direction forward
Mean pairwise identity 83.48
Mean single sequence MFE -31.64
Consensus MFE -23.67
Energy contribution -23.57
Covariance contribution -0.10
Combinations/Pair 1.47
Mean z-score -1.88
Structure conservation index 0.75
SVM decision value 0.25
SVM RNA-class probability 0.654709
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18836521 94 + 23771897
UCCCGGAACUGAAACAGUGGAUUAUCUAGGCUCGAUUCUAAUUGGGUCUCCUCAACUCGCCGUUUUGGCUGCACUGCAGCCGGUUCCGAAGAGC
...((((((((((((.(((..((....(((((((((....)))))))))....))..))).)))))((((((...)))))))))))))...... ( -36.40)
>DroSec_CAF1 1705 94 + 1
UCCCGGAACUGAAACAGGGGAUUAUCUAGGCUCGAUUCUAAUUGGGUCUCCUCCACUCGUCGUUUUGGCUGCACUGCAGCCGGUUCCGAAGAGC
...(((((((((((((.(((.......(((((((((....)))))))))......))).).)))))((((((...)))))))))))))...... ( -33.72)
>DroSim_CAF1 1735 94 + 1
UCCCGAAACUGAAACAGUGGAUUAUCUAGGCUCGAUUCUAAUUGGGUCUCCUCCACUCGCCGUUUUGGCUGCACUGCAGCCGCUUCCGAAGAGC
....(((((.(....((((((......(((((((((....)))))))))..))))))..).)))))((((((...))))))((((.....)))) ( -29.40)
>DroEre_CAF1 1763 94 + 1
UCCCGGAACUGGAACAGAGGAUUAUCUAAGCUCAAUUCUAAUUGGGUCUCCUCUACUCGGCGUUUUGGCUGCACUGCAGCCAGUUCUGAAGAGC
...(((((((.((..((((((........(((((((....))))))).))))))..))........((((((...)))))))))))))...... ( -30.60)
>DroYak_CAF1 1740 94 + 1
UCCCGGAAUAGGAACAGAGGAUUAUCUAGGCUUGAUUCUAAUUGGGUCUCCUCCACUCGACGUUUCGGCUGCACUGCAGACGGUUCUGAAGAGC
..(((((((..((...(((((.......((((..((....))..)))))))))...))...)))))))..((.((.((((....)))).)).)) ( -23.31)
>DroAna_CAF1 1948 94 + 1
UUCCGGAACUGAAACAGAGGUGUCUCUAUACUCGUUUCGUGGUCACUUUCGGCCAAUCUUCGUUUUGGUUGAGAUCUAGCCGGUUCCGGAGCGC
(((((((((((((((.(((...........))))))))..(((...((((((((((........))))))))))....)))))))))))))... ( -36.40)
>consensus
UCCCGGAACUGAAACAGAGGAUUAUCUAGGCUCGAUUCUAAUUGGGUCUCCUCCACUCGCCGUUUUGGCUGCACUGCAGCCGGUUCCGAAGAGC
...((((((((((((.(((........(((((((((....)))))))))......)))...)))))((((((...)))))))))))))...... (-23.67 = -23.57 +  -0.10)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:42 2006