Locus 6977

Sequence ID 3L_DroMel_CAF1
Location 18,825,800 – 18,825,902
Length 102
Max. P 0.600120
window11316

overview

Window 6

Location 18,825,800 – 18,825,902
Length 102
Sequences 6
Columns 119
Reading direction forward
Mean pairwise identity 66.13
Mean single sequence MFE -40.47
Consensus MFE -8.40
Energy contribution -8.73
Covariance contribution 0.33
Combinations/Pair 1.29
Mean z-score -2.25
Structure conservation index 0.21
SVM decision value 0.13
SVM RNA-class probability 0.600120
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18825800 102 + 23771897
GCGCAACAAGGAAUAGUGUAGGUCCU--CGGCAAUAAAAAACCAAUGCCAGGACUCUCAUUGGUCGCCAU-CG--AAAAGGCAGCCGAGCGAA------------AGCCGAGCUGCGGU
.(((......((.(((((..((((((--.((((............))))))))))..))))).))(((..-..--....)))(((((.((...------------.)))).)))))).. ( -38.60)
>DroPse_CAF1 18913 113 + 1
GCGCCGU--GGAGGAAAAUAUUUCCUGCGGGCGACAUC-GGUAAAUGCCGGAACGCUGAUUGGUCGCCUGAUGGCAAAAG---GCCGAGCAGAUGUCGGUGCCGAGGCCGAAGCCGUGU
.((((.(--(.(((((.....))))).))))))((.((-(((....(((((....(((.(((((((((....)))....)---))))).)))...))))))))))(((....))))).. ( -46.40)
>DroEre_CAF1 11820 101 + 1
GCGCAACAAGGAAUAGUGUAGGUCCU--CGGCAACAAA-ACCAAAUGCCAGGACUCUCAUUGGUCGCCUG-UG--AAAGGGCUGCCGAGCGAA------------AGCCGAGCUGCGGU
.((((.....((.(((((..((((((--.((((.....-......))))))))))..))))).))((((.-..--...)))).((((.((...------------.)))).)))))).. ( -39.20)
>DroYak_CAF1 988 101 + 1
GCGCAACAAGGAAUAGUGUAGGUCCU--CGGCAACAAA-ACCAAAUGCCAGGACUCUCAUUGGUCGCCUG-UG--AAAAGGCUGCCGAGCGAA------------AGCCGAGCUGCGGU
.((((.....((.(((((..((((((--.((((.....-......))))))))))..))))).))((((.-..--...)))).((((.((...------------.)))).)))))).. ( -39.80)
>DroAna_CAF1 1291 102 + 1
GCGCCGUUUGUCACAGUCCUGUGCCA--AGUCAACAAA-AACCAGCUACAGGACUCUCAUUGGUCGCUUGUUG--GAAUGGAUGCCGAACGAA------------AGCCGAGCGGCAGU
..((((((((....((((((((((..--.((.......-.))..)).))))))))..........((((.(((--(........))))....)------------)))))))))))... ( -32.40)
>DroPer_CAF1 19341 113 + 1
GCGCCGU--GGAGGAAAAUAUUUCCUGCGGGCGACAUC-GGUAAAUGCCGGAACGCUGAUUGGUCGCCUGAUGGCAAAAG---GCCGAGCAGAUGUCGGUGCCGAGGCCGAAGCCGUGU
.((((.(--(.(((((.....))))).))))))((.((-(((....(((((....(((.(((((((((....)))....)---))))).)))...))))))))))(((....))))).. ( -46.40)
>consensus
GCGCAACAAGGAAUAGUGUAGGUCCU__CGGCAACAAA_AACAAAUGCCAGGACUCUCAUUGGUCGCCUG_UG__AAAAGGCUGCCGAGCGAA____________AGCCGAGCUGCGGU
((...........................((((............))))..........(((((..(((.........)))..)))))..................))........... ( -8.40 =  -8.73 +   0.33)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:36 2006