Locus 6974

Sequence ID 3L_DroMel_CAF1
Location 18,822,570 – 18,822,689
Length 119
Max. P 0.689894
window11310

overview

Window 0

Location 18,822,570 – 18,822,689
Length 119
Sequences 5
Columns 120
Reading direction forward
Mean pairwise identity 81.54
Mean single sequence MFE -26.65
Consensus MFE -16.58
Energy contribution -18.86
Covariance contribution 2.28
Combinations/Pair 1.19
Mean z-score -1.90
Structure conservation index 0.62
SVM decision value 0.33
SVM RNA-class probability 0.689894
Prediction RNA

Download alignment: ClustalW | MAF

>3L_DroMel_CAF1 18822570 119 + 23771897
AUGAA-AAGCCGGAAAAUGCACUUUCCAUGUUAGCUGCUAGUCAAACUGCUUAAUUGCGCAUUAAAUAUGCAGAAAAGUAGGCAAAACGAGCGGAAAAUAUGCGCAAGGGUAAGGGAUCG
.....-..((((((((......)))))(((((..(((((.((....((((((..(((((.........)))))..)))))).....)).)))))..))))).(....))))......... ( -27.50)
>DroSec_CAF1 29870 119 + 1
AUGAA-AAGCCGGAAAAUGCACUUUCCAUGUUAGCUGCUAGUCAAACUGCUUAAUUGCGCAUUAAAUAUGCAGAAAAGUAGGCAAAACGAGCGGAAAAUAUGCGAAAGGGGAAGGGAUCG
..((.-..((........)).(((((((((((..(((((.((....((((((..(((((.........)))))..)))))).....)).)))))..))))).(....).))))))..)). ( -28.70)
>DroSim_CAF1 30968 119 + 1
AUGAA-AAGCCGGAAAAUGCACUUUCCAUGUUAGCUGCUAGUCAAACUGCUUAAUUGCGCAUUAAAUAUGCAGAAAAGUAGGCAAAACGAGCGGAAAAUAUGCGAAAGGGGAAGGGAUCG
..((.-..((........)).(((((((((((..(((((.((....((((((..(((((.........)))))..)))))).....)).)))))..))))).(....).))))))..)). ( -28.70)
>DroMoj_CAF1 33280 98 + 1
GAGGUGAGAACAUGAAAUGCAUUUUCCAUGUUAGCUGCUAUUCAAAUUGCUUAAUUGCGUAUUAAAUAUGCAGAAAAGUAGGCAAAACGCAAAAAAAA----------------------
..(((...(((((((((.....))).)))))).)))..........(((((((.((((((((...)))))))).....))))))).............---------------------- ( -19.30)
>DroAna_CAF1 21071 120 + 1
AUGGAAAGGCCGGAAAAUGCAUUUUCCAUGUUAGCUGCUAGUCAAAUGGCUUAAUUGCGUAUUAAAUAUGCAGAAAAGUAGGCAAAAAGAGCGGAAAAUAUGGGGAGGGAGGAGAAAGUG
.(((.....))).........((..(((((((..(((((.........(((((.((((((((...)))))))).....)))))......)))))..)))))))..))............. ( -29.06)
>consensus
AUGAA_AAGCCGGAAAAUGCACUUUCCAUGUUAGCUGCUAGUCAAACUGCUUAAUUGCGCAUUAAAUAUGCAGAAAAGUAGGCAAAACGAGCGGAAAAUAUGCGAAAGGGGAAGGGAUCG
.....................(((((((((((..(((((.......((((((..(((((.........)))))..))))))........)))))..)))))).)))))............ (-16.58 = -18.86 +   2.28)

alignment

Postscript

secondary structure

Postscript

dotplot

Postscript

Generated by rnazCluster.pl (part of RNAz 1.0) on Mon Dec 4 12:34:30 2006